Variant report

Variant	rs10807031
Chromosome Location	chr6:28394650-28394651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28380846..28382983-chr6:28391973..28394917,2	K562	blood:
2	chr6:28349465..28351465-chr6:28394048..28396108,2	MCF-7	breast:
3	chr6:28392901..28395106-chr6:28398520..28400756,3	K562	blood:
4	chr6:28373846..28375488-chr6:28394522..28397398,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10807030	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755387	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13190937	0.82[ASN][1000 genomes]
rs13193272	0.82[ASN][1000 genomes]
rs13203055	0.82[ASN][1000 genomes]
rs13209596	0.82[ASN][1000 genomes]
rs16894011	0.89[EUR][1000 genomes]
rs16894091	0.82[ASN][1000 genomes]
rs16894106	0.82[ASN][1000 genomes]
rs16894128	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17856167	0.83[EUR][1000 genomes]
rs2108923	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34302671	0.82[AFR][1000 genomes]
rs35908902	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6902687	0.82[ASN][1000 genomes]
rs6905380	0.80[ASN][1000 genomes]
rs71559081	0.82[ASN][1000 genomes]
rs7740429	0.82[ASN][1000 genomes]
rs9468364	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9969098	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836974	chr6:28376981-28398748	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28385400-28402000	Weak transcription	Fetal Kidney	kidney
4	chr6:28385400-28402200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:28385600-28410800	Weak transcription	Lung	lung
6	chr6:28386000-28402200	Weak transcription	Osteobl	bone
7	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:28386200-28395800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:28386600-28397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:28386800-28402200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:28387800-28395400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
13	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
14	chr6:28388400-28399200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:28389200-28410200	Weak transcription	NHLF	lung
16	chr6:28389400-28403200	Weak transcription	Adipose Nuclei	Adipose
17	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:28389600-28398200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
24	chr6:28390200-28410400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:28391000-28395200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:28391400-28402400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:28391400-28410400	Weak transcription	Fetal Intestine Large	intestine
28	chr6:28391400-28410800	Weak transcription	Placenta	Placenta
29	chr6:28391600-28397600	Weak transcription	Ovary	ovary
30	chr6:28391600-28401800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:28391600-28402000	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:28391600-28402000	Weak transcription	Left Ventricle	heart
33	chr6:28391600-28402000	Weak transcription	Psoas Muscle	Psoas
34	chr6:28391600-28402200	Weak transcription	HSMMtube	muscle
35	chr6:28391600-28402200	Weak transcription	NH-A	brain
36	chr6:28391600-28410200	Weak transcription	Brain Anterior Caudate	brain
37	chr6:28391600-28410800	Weak transcription	Pancreas	Pancrea
38	chr6:28392000-28395200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:28392000-28397800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:28392000-28398200	Weak transcription	HSMM	muscle
41	chr6:28392000-28410200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:28392000-28410400	Weak transcription	NHEK	skin
43	chr6:28392200-28402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:28392200-28410400	Weak transcription	Right Ventricle	heart
45	chr6:28392400-28397800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:28392400-28410000	Weak transcription	HMEC	breast
47	chr6:28392400-28410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:28392600-28394800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr6:28392800-28395200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:28393000-28395400	Strong transcription	Fetal Brain Male	brain

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