Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28439833..28442457-chr6:28444087..28445885,2	K562	blood:
2	chr6:28105533..28107833-chr6:28443278..28445327,2	MCF-7	breast:
3	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
4	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1005126	0.82[CHB][hapmap]
rs1029328	1.00[CEU][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes]
rs10807030	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10807031	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11751928	0.82[CHB][hapmap]
rs11755387	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13190937	0.82[CHB][hapmap]
rs13196606	0.82[CHB][hapmap]
rs13199081	0.82[CHB][hapmap]
rs13215804	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs16894011	0.91[CHB][hapmap]
rs17856167	0.91[CHB][hapmap]
rs2108923	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2232427	0.91[CHB][hapmap]
rs34302671	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35908902	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3799499	0.82[CHB][hapmap]
rs3799500	0.82[CHB][hapmap]
rs61535158	0.82[ASN][1000 genomes]
rs6902687	0.81[CHB][hapmap]
rs6905380	0.82[CHB][hapmap]
rs7754960	0.82[CHB][hapmap]
rs7774981	0.82[CHB][hapmap]
rs9468358	0.82[CHB][hapmap]
rs9468364	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv3332004	chr6:28444117-28444296	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16894128	ZKSCAN3	cis	cerebellum	SCAN
rs16894128	GMNN	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28443400-28446400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:28443400-28447800	Weak transcription	K562	blood

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