Variant report

Variant	rs10807188
Chromosome Location	chr6:37789028-37789029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37788598..37791926-chr6:37799655..37801709,3	K562	blood:
2	chr6:37788588..37790791-chr6:37827723..37829422,2	MCF-7	breast:
3	chr6:37788608..37792008-chr6:37826692..37829268,3	K562	blood:
4	chr6:37787991..37789516-chr6:37789518..37791025,2	MCF-7	breast:
5	chr3:64084830..64086992-chr6:37787357..37789363,2	MCF-7	breast:
6	chr6:37785884..37787754-chr6:37789028..37791294,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction
ENSG00000241572	Chromatin interaction
ENSG00000243313	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456096	0.98[EUR][1000 genomes]
rs1187422	0.93[EUR][1000 genomes]
rs1187423	0.94[EUR][1000 genomes]
rs12192182	0.88[EUR][1000 genomes]
rs12198907	0.86[EUR][1000 genomes]
rs12200258	0.81[EUR][1000 genomes]
rs12206818	0.88[EUR][1000 genomes]
rs12211248	0.88[EUR][1000 genomes]
rs12211981	0.90[EUR][1000 genomes]
rs12213835	0.88[EUR][1000 genomes]
rs13210701	0.89[EUR][1000 genomes]
rs171831	0.84[EUR][1000 genomes]
rs1812599	0.87[EUR][1000 genomes]
rs2395686	0.98[EUR][1000 genomes]
rs259673	0.85[EUR][1000 genomes]
rs259684	0.82[EUR][1000 genomes]
rs259686	0.80[EUR][1000 genomes]
rs259689	0.82[EUR][1000 genomes]
rs259690	0.82[EUR][1000 genomes]
rs259691	0.82[EUR][1000 genomes]
rs259695	0.84[EUR][1000 genomes]
rs259713	0.94[EUR][1000 genomes]
rs259715	0.96[EUR][1000 genomes]
rs259716	0.95[EUR][1000 genomes]
rs34871463	0.88[EUR][1000 genomes]
rs6458027	0.99[EUR][1000 genomes]
rs6458028	0.98[EUR][1000 genomes]
rs6458029	0.92[EUR][1000 genomes]
rs7755089	0.96[EUR][1000 genomes]
rs9296232	0.98[EUR][1000 genomes]
rs9394460	0.98[EUR][1000 genomes]
rs9647619	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs966705	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3328154	chr6:37786599-37789347	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37785400-37789200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:37785800-37789200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:37786000-37789200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:37786000-37789200	Active TSS	Fetal Intestine Large	intestine
5	chr6:37786000-37789200	Active TSS	Right Ventricle	heart
6	chr6:37786000-37789200	Active TSS	GM12878-XiMat	blood
7	chr6:37786000-37789800	Active TSS	Psoas Muscle	Psoas
8	chr6:37786000-37790000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:37786200-37789200	Active TSS	Pancreas	Pancrea
10	chr6:37786400-37789200	Active TSS	Brain Anterior Caudate	brain
11	chr6:37786400-37789200	Active TSS	HSMMtube	muscle
12	chr6:37786400-37789200	Active TSS	NHLF	lung
13	chr6:37786600-37789200	Active TSS	Fetal Muscle Leg	muscle
14	chr6:37788000-37789400	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:37788200-37789200	Weak transcription	Spleen	Spleen
16	chr6:37788200-37789400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:37788200-37789400	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr6:37788200-37789400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:37788200-37789400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr6:37788200-37789400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:37788200-37789400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:37788200-37789400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr6:37788200-37789600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:37788200-37789600	Flanking Active TSS	Dnd41	blood
25	chr6:37788200-37790200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:37788400-37789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:37788400-37789200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37788400-37789200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:37788400-37789200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:37788400-37789200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr6:37788400-37789200	Weak transcription	Gastric	stomach
32	chr6:37788400-37789400	Flanking Active TSS	Brain Angular Gyrus	brain
33	chr6:37788400-37789400	Flanking Active TSS	Fetal Brain Male	brain
34	chr6:37788400-37789400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:37788400-37789400	Flanking Active TSS	NHEK	skin
36	chr6:37788400-37789600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr6:37788400-37789600	Flanking Active TSS	Fetal Brain Female	brain
38	chr6:37788400-37789600	Flanking Active TSS	HMEC	breast
39	chr6:37788400-37789600	Flanking Active TSS	HUVEC	blood vessel
40	chr6:37788400-37789600	Flanking Active TSS	K562	blood
41	chr6:37788400-37791000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr6:37788600-37789200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:37788600-37789400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:37788600-37789400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:37788600-37789400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr6:37788600-37789400	Flanking Active TSS	HepG2	liver
47	chr6:37788600-37789600	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr6:37788600-37789600	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr6:37788600-37789600	Flanking Active TSS	NHDF-Ad	bronchial
50	chr6:37788600-37789600	Flanking Active TSS	Osteobl	bone

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