Variant report

Variant	rs2395686
Chromosome Location	chr6:37773552-37773553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
2	chr6:37773348..37778942-chr6:37784434..37789284,15	MCF-7	breast:
3	chr6:37762868..37765760-chr6:37771569..37774274,2	MCF-7	breast:
4	chr6:37771553..37779758-chr6:37784024..37789413,23	MCF-7	breast:
5	chr6:37772786..37776209-chr6:37782926..37786197,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFAND3-2	chr6:37773289-37773659	predAs_ge08_MDGA1_2

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456096	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10807188	0.98[EUR][1000 genomes]
rs1187422	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1187423	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12192182	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12198907	0.85[EUR][1000 genomes]
rs12200258	0.80[EUR][1000 genomes]
rs12206818	0.87[EUR][1000 genomes]
rs12211248	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12211981	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12213835	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13210701	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs171831	0.84[EUR][1000 genomes]
rs1812599	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs259673	0.85[EUR][1000 genomes]
rs259684	0.82[EUR][1000 genomes]
rs259686	0.80[EUR][1000 genomes]
rs259689	0.82[EUR][1000 genomes]
rs259690	0.82[EUR][1000 genomes]
rs259691	0.82[EUR][1000 genomes]
rs259695	0.84[EUR][1000 genomes]
rs259713	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs259715	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs259716	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34871463	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6458027	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458028	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458029	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7755089	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296232	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394460	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9647619	0.88[EUR][1000 genomes]
rs966705	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37769000-37775400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:37769600-37776800	Weak transcription	Liver	Liver
6	chr6:37772600-37773600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:37772600-37775200	Weak transcription	HSMMtube	muscle
8	chr6:37772600-37776800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:37772800-37774600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:37773000-37775200	Weak transcription	HMEC	breast
11	chr6:37773000-37775200	Weak transcription	NHEK	skin
12	chr6:37773000-37776800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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