Variant report

Variant	rs6458027
Chromosome Location	chr6:37769420-37769421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10456096	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10485029	0.88[CHB][hapmap];0.81[AFR][1000 genomes]
rs10807188	0.99[EUR][1000 genomes]
rs1187421	0.85[CEU][hapmap]
rs1187422	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1187423	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12192182	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12198907	0.86[EUR][1000 genomes]
rs12200258	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes]
rs12206818	0.88[EUR][1000 genomes]
rs12211248	0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12211981	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12213835	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13210701	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs171831	0.85[EUR][1000 genomes]
rs1812599	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2055206	0.85[CEU][hapmap]
rs2395686	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259673	0.86[EUR][1000 genomes]
rs259679	0.80[CEU][hapmap]
rs259684	0.83[EUR][1000 genomes]
rs259686	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes]
rs259689	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs259690	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs259691	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs259695	0.85[EUR][1000 genomes]
rs259713	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs259715	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs259716	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs259718	0.80[CEU][hapmap]
rs2645107	0.96[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2645116	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs2842517	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs34871463	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6458028	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6941057	0.81[CEU][hapmap]
rs7755089	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9647619	0.87[EUR][1000 genomes]
rs966705	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37767800-37769600	Weak transcription	Aorta	Aorta
5	chr6:37768800-37769600	Enhancers	Liver	Liver
6	chr6:37769000-37770800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:37769000-37775400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:37769200-37769600	Enhancers	HepG2	liver
9	chr6:37769400-37771400	Enhancers	Primary monocytes fromperipheralblood	blood

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