Variant report
| Variant | rs10808110 |
|---|---|
| Chromosome Location | chr7:98755095-98755096 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198742 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10953281 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10953282 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10953283 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11982330 | 0.89[EUR][1000 genomes] |
| rs12705030 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12705031 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13222381 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13235218 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17147666 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2056659 | 0.87[ASN][1000 genomes] |
| rs34344936 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4729515 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4729516 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4729521 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs56072276 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62473049 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6952161 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6956695 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6965158 | 0.89[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7794690 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7807000 | 0.85[ASN][1000 genomes] |
| rs941001 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024529 | chr7:98194830-98793518 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539036 | chr7:98194830-98793518 | Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | esv2755119 | chr7:98721885-98800145 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:98753000-98759800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:98753800-98760000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
