Variant report

Variant	rs12705031
Chromosome Location	chr7:98765136-98765137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98764772..98767332-chr7:98921927..98924468,2	MCF-7	breast:
2	chr7:98740582..98743069-chr7:98764310..98765816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10499947	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs10808110	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953281	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953282	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10953283	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11982330	0.94[EUR][1000 genomes]
rs12705030	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13222381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13235218	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17147666	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1986465	0.94[JPT][hapmap]
rs2056659	0.83[ASN][1000 genomes]
rs34344936	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4729514	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs4729515	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4729516	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4729521	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56072276	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56132062	0.83[EUR][1000 genomes]
rs62473049	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6465737	0.86[JPT][hapmap]
rs6952161	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6956695	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6965158	0.84[EUR][1000 genomes]
rs7794690	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7807000	0.82[ASN][1000 genomes]
rs941001	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	nsv464645	chr7:98755272-98788589	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv464646	chr7:98755272-98788589	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv607925	chr7:98755272-98788589	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv528070	chr7:98759117-98766930	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98760800-98767000	Weak transcription	HepG2	liver
2	chr7:98760800-98768600	Weak transcription	Pancreas	Pancrea
3	chr7:98764600-98765200	Enhancers	Stomach Mucosa	stomach

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