Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:98740342..98743513-chr7:98744665..98747630,5	MCF-7	breast:
2	chr7:98744404..98747208-chr7:98758596..98760579,2	MCF-7	breast:
3	chr7:98739425..98742547-chr7:98743617..98746560,5	K562	blood:
4	chr7:98738148..98740026-chr7:98743359..98745839,2	MCF-7	breast:
5	chr7:98738526..98746153-chr7:98804876..98809686,18	MCF-7	breast:
6	chr7:98741722..98743418-chr7:98744692..98747371,2	MCF-7	breast:
7	chr7:98744627..98747517-chr7:98820164..98821746,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185467	Chromatin interaction
ENSG00000198742	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10808110	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953281	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10953282	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953283	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11982330	0.90[EUR][1000 genomes]
rs12705030	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705031	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13222381	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13235218	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17147666	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2056659	0.85[ASN][1000 genomes]
rs34344936	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4729516	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4729521	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56072276	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62473049	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6952161	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6956695	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6965158	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7794690	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7807000	0.84[ASN][1000 genomes]
rs941001	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	esv1792421	chr7:98737119-98752081	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98744000-98745800	Weak transcription	K562	blood

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