Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10086720	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100258	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10108890	0.83[ASN][1000 genomes]
rs10808688	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11782856	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251766	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13251779	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13260332	0.80[EUR][1000 genomes]
rs13261171	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28621890	0.83[ASN][1000 genomes]
rs2939974	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2977384	0.91[ASN][1000 genomes]
rs2977386	0.94[ASN][1000 genomes]
rs2977390	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2977391	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34415132	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35320500	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35764763	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36094668	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4373508	0.92[ASN][1000 genomes]
rs4398899	0.92[ASN][1000 genomes]
rs7815202	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59093200-59103200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59093400-59105600	Weak transcription	HMEC	breast
3	chr8:59098600-59104000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59100400-59103400	Weak transcription	Fetal Stomach	stomach
5	chr8:59100400-59104000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:59100800-59104600	Weak transcription	Fetal Brain Male	brain
7	chr8:59101400-59101800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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