Variant report

Variant	rs13260332
Chromosome Location	chr8:59085451-59085452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59080478..59082604-chr8:59084675..59086709,2	K562	blood:
2	chr8:59082438..59084332-chr8:59084919..59087190,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086720	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10100258	0.82[EUR][1000 genomes]
rs10108890	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808688	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10808689	0.80[EUR][1000 genomes]
rs10957034	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11782856	0.80[EUR][1000 genomes]
rs13261171	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13262713	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13275097	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1876379	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2048102	0.83[EUR][1000 genomes]
rs2048103	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2221576	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28621890	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35320500	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36094668	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4373508	0.81[ASN][1000 genomes]
rs4398899	0.81[ASN][1000 genomes]
rs7013758	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7464538	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815202	0.95[EUR][1000 genomes]
rs7827907	0.82[EUR][1000 genomes]
rs7833271	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs979444	0.83[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59083200-59085800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:59083400-59087000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:59084200-59092000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:59084200-59099800	Weak transcription	Fetal Brain Female	brain
5	chr8:59084800-59085600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:59085000-59085600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:59085000-59085600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:59085000-59085600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr8:59085000-59085800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:59085000-59086000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:59085000-59086200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:59085000-59086600	Enhancers	Placenta	Placenta
13	chr8:59085200-59085600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr8:59085200-59085600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr8:59085200-59085600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:59085200-59085800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:59085200-59085800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:59085200-59085800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:59085200-59085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:59085200-59085800	Enhancers	K562	blood
21	chr8:59085400-59085600	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr8:59085400-59085600	Flanking Active TSS	HepG2	liver
23	chr8:59085400-59085600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr8:59085400-59085800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr8:59085400-59086200	Enhancers	Primary hematopoietic stem cells	blood
26	chr8:59085400-59086600	Enhancers	Primary B cells from cord blood	blood

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