Variant report

Variant	rs7013758
Chromosome Location	chr8:59083439-59083440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10108890	0.82[EUR][1000 genomes]
rs10957034	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13260332	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13262713	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1876379	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2048102	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048103	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2221576	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28621890	0.81[EUR][1000 genomes]
rs35320500	0.82[EUR][1000 genomes]
rs7464538	0.80[ASN][1000 genomes]
rs7827907	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979444	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7013758	PLAG1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59068400-59085000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59081600-59084000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:59082400-59085200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:59082800-59083800	Weak transcription	HepG2	liver
5	chr8:59083200-59085800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:59083400-59087000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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