Variant report

Variant	rs10808690
Chromosome Location	chr8:59104280-59104281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10101975	0.82[EUR][1000 genomes]
rs10808691	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957035	0.82[EUR][1000 genomes]
rs11509962	0.81[ASN][1000 genomes]
rs11774941	0.82[EUR][1000 genomes]
rs11781890	0.82[EUR][1000 genomes]
rs13248396	0.82[EUR][1000 genomes]
rs13254575	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1507079	0.82[EUR][1000 genomes]
rs1911505	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2048101	0.82[EUR][1000 genomes]
rs34585324	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55693283	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59093400-59105600	Weak transcription	HMEC	breast
2	chr8:59100800-59104600	Weak transcription	Fetal Brain Male	brain
3	chr8:59103400-59104800	Enhancers	Colon Smooth Muscle	Colon
4	chr8:59103400-59105000	Enhancers	Fetal Stomach	stomach
5	chr8:59103800-59110400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:59104000-59104400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:59104000-59104400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:59104000-59104600	Enhancers	Fetal Lung	lung
9	chr8:59104000-59104800	Enhancers	NHDF-Ad	bronchial
10	chr8:59104000-59105200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:59104000-59105800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:59104200-59104600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:59104200-59105000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:59104200-59105200	Enhancers	Rectal Smooth Muscle	rectum
15	chr8:59104200-59105800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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