Variant report

Variant	rs13248396
Chromosome Location	chr8:59105495-59105496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59102071..59103829-chr8:59104945..59107141,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10096039	0.82[ASN][1000 genomes]
rs10096199	0.82[ASN][1000 genomes]
rs10101975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10107491	0.81[ASN][1000 genomes]
rs10107691	0.82[ASN][1000 genomes]
rs10109119	0.82[ASN][1000 genomes]
rs10110724	0.82[ASN][1000 genomes]
rs10110841	0.82[ASN][1000 genomes]
rs10808690	0.82[EUR][1000 genomes]
rs10808691	0.82[EUR][1000 genomes]
rs10957035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957036	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10957037	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11509962	0.84[ASN][1000 genomes]
rs11774941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787530	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12375262	0.82[ASN][1000 genomes]
rs12375412	0.82[ASN][1000 genomes]
rs13255725	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13261017	0.82[ASN][1000 genomes]
rs1354817	0.82[ASN][1000 genomes]
rs1395615	0.82[ASN][1000 genomes]
rs1507079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507082	0.82[ASN][1000 genomes]
rs1911505	0.82[EUR][1000 genomes]
rs2048101	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34585324	0.82[EUR][1000 genomes]
rs4285476	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4531043	0.82[ASN][1000 genomes]
rs4623403	0.80[ASN][1000 genomes]
rs55693283	0.84[ASN][1000 genomes]
rs55921132	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56248540	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471690	0.80[ASN][1000 genomes]
rs6993098	0.82[ASN][1000 genomes]
rs6996832	0.82[ASN][1000 genomes]
rs7010475	0.82[ASN][1000 genomes]
rs7010647	0.82[ASN][1000 genomes]
rs7010816	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59093400-59105600	Weak transcription	HMEC	breast
2	chr8:59103800-59110400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:59104000-59105800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:59104200-59105800	Enhancers	NH-A	brain
5	chr8:59104400-59105600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:59104400-59105600	Enhancers	Fetal Heart	heart
7	chr8:59104400-59108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59104800-59105600	Enhancers	HSMM	muscle
10	chr8:59104800-59105800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr8:59104800-59106600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:59104800-59108000	Weak transcription	NHDF-Ad	bronchial
13	chr8:59105000-59105800	Weak transcription	Placenta	Placenta
14	chr8:59105000-59108200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:59105000-59109800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:59105000-59110000	Weak transcription	Fetal Stomach	stomach
17	chr8:59105200-59108000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:59105200-59108000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:59105200-59108200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:59105200-59114800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:59105400-59108200	Weak transcription	Colon Smooth Muscle	Colon

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