Variant report

Variant	rs2048101
Chromosome Location	chr8:59103430-59103431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10101975	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808690	0.82[EUR][1000 genomes]
rs10808691	0.82[EUR][1000 genomes]
rs10957035	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957036	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10957037	0.93[ASN][1000 genomes]
rs11774941	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11781890	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11787530	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13248396	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13255725	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1507079	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1911505	0.82[EUR][1000 genomes]
rs34585324	0.82[EUR][1000 genomes]
rs4285476	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs55921132	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56248540	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59093400-59105600	Weak transcription	HMEC	breast
2	chr8:59098600-59104000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:59100400-59104000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:59100800-59104600	Weak transcription	Fetal Brain Male	brain
5	chr8:59101800-59104000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:59102800-59104000	Weak transcription	NHDF-Ad	bronchial
7	chr8:59103200-59103800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59103400-59104800	Enhancers	Colon Smooth Muscle	Colon
9	chr8:59103400-59105000	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links