Variant report

Variant	rs55921132
Chromosome Location	chr8:59110426-59110427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59106915..59110868-chr8:59145602..59149155,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-1	chr8:59110390-59110651	NONHSAT126770
2	lnc-FAM110B-1	chr8:59110390-59110716	NONHSAT126766

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10096039	0.82[ASN][1000 genomes]
rs10096199	0.82[ASN][1000 genomes]
rs10101975	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10107491	0.81[ASN][1000 genomes]
rs10107691	0.82[ASN][1000 genomes]
rs10109119	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10110724	0.82[ASN][1000 genomes]
rs10110841	0.82[ASN][1000 genomes]
rs10957035	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10957036	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957037	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11509962	0.84[ASN][1000 genomes]
rs11774941	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11781890	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11787530	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12375262	0.82[ASN][1000 genomes]
rs12375412	0.82[ASN][1000 genomes]
rs13248396	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13255725	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261017	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1354817	0.82[ASN][1000 genomes]
rs1395615	0.82[ASN][1000 genomes]
rs1507079	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1507082	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048101	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4285476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531043	0.82[ASN][1000 genomes]
rs4623403	0.80[ASN][1000 genomes]
rs55693283	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56248540	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6471690	0.80[ASN][1000 genomes]
rs6993098	0.82[ASN][1000 genomes]
rs6996832	0.82[ASN][1000 genomes]
rs7010475	0.82[ASN][1000 genomes]
rs7010647	0.82[ASN][1000 genomes]
rs7010816	0.82[ASN][1000 genomes]
rs7464020	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:59105200-59114800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:59108000-59110800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:59108000-59111000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:59108000-59111000	Enhancers	NHDF-Ad	bronchial
6	chr8:59109600-59110600	Weak transcription	NHLF	lung
7	chr8:59110000-59110800	Enhancers	Fetal Stomach	stomach
8	chr8:59110000-59115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:59110000-59124600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:59110400-59110800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:59110400-59110800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links