Variant report

Variant	rs13261017
Chromosome Location	chr8:59115935-59115936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59107209..59109473-chr8:59113405..59116063,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10086052	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10086519	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10086679	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10094616	0.80[EUR][1000 genomes]
rs10094627	0.80[EUR][1000 genomes]
rs10096039	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096199	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097353	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10097738	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10097852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10101975	0.82[ASN][1000 genomes]
rs10102197	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10107491	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10107691	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109119	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110724	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110841	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113079	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1077075	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808691	0.84[ASN][1000 genomes]
rs10957035	0.82[ASN][1000 genomes]
rs10957036	0.82[ASN][1000 genomes]
rs10957037	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11509962	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11774941	0.82[ASN][1000 genomes]
rs11775081	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11775997	0.80[EUR][1000 genomes]
rs11776117	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777786	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11781890	0.82[ASN][1000 genomes]
rs11782854	0.80[EUR][1000 genomes]
rs11782857	0.80[EUR][1000 genomes]
rs11787530	0.81[ASN][1000 genomes]
rs12375262	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375412	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248396	0.82[ASN][1000 genomes]
rs13251851	0.84[EUR][1000 genomes]
rs13255725	0.82[ASN][1000 genomes]
rs13261000	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13265973	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1354817	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395615	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507079	0.82[ASN][1000 genomes]
rs1507082	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923200	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1911505	0.84[ASN][1000 genomes]
rs2089409	0.80[EUR][1000 genomes]
rs2089410	0.80[EUR][1000 genomes]
rs28536192	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34585324	0.84[ASN][1000 genomes]
rs3888938	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3888940	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4285476	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4455813	0.80[EUR][1000 genomes]
rs4531043	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623403	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55693283	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55921132	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56248540	0.82[ASN][1000 genomes]
rs6471689	0.80[EUR][1000 genomes]
rs6471690	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6993098	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996832	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010475	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010647	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010816	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827077	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827364	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7834557	0.84[EUR][1000 genomes]
rs7837829	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837946	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:59110000-59124600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:59110800-59121400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:59115000-59116000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:59115000-59116000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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