Variant report

Variant	rs13255725
Chromosome Location	chr3:135921196-135921197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135914359..135917940-chr3:135918665..135923350,9	MCF-7	breast:
2	chr3:135913662..135918303-chr3:135918792..135923600,7	K562	blood:
3	chr3:135914663..135917728-chr3:135920669..135925255,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10096039	0.82[ASN][1000 genomes]
rs10096199	0.82[ASN][1000 genomes]
rs10101975	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10107491	0.81[ASN][1000 genomes]
rs10107691	0.82[ASN][1000 genomes]
rs10109119	0.82[ASN][1000 genomes]
rs10110724	0.82[ASN][1000 genomes]
rs10110841	0.82[ASN][1000 genomes]
rs10957035	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10957036	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957037	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11509962	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11774941	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11781890	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11787530	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12375262	0.82[ASN][1000 genomes]
rs12375412	0.82[ASN][1000 genomes]
rs13248396	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13261017	0.82[ASN][1000 genomes]
rs1354817	0.82[ASN][1000 genomes]
rs1395615	0.82[ASN][1000 genomes]
rs1507079	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1507082	0.82[ASN][1000 genomes]
rs2048101	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4285476	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531043	0.82[ASN][1000 genomes]
rs4623403	0.80[ASN][1000 genomes]
rs55693283	0.84[ASN][1000 genomes]
rs55921132	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56248540	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6471690	0.80[ASN][1000 genomes]
rs6993098	0.82[ASN][1000 genomes]
rs6996832	0.82[ASN][1000 genomes]
rs7010475	0.82[ASN][1000 genomes]
rs7010647	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7010816	0.82[ASN][1000 genomes]
rs7464020	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv965213	chr3:135920236-135925920	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135916200-135922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:135917200-135922400	Weak transcription	HUVEC	blood vessel
3	chr3:135917400-135922000	Weak transcription	HepG2	liver

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