Variant report

Variant	rs2089410
Chromosome Location	chr8:59125300-59125301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10086052	0.81[EUR][1000 genomes]
rs10094616	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10094627	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10096039	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10096199	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10102197	0.81[EUR][1000 genomes]
rs10107491	0.81[EUR][1000 genomes]
rs10109119	0.80[EUR][1000 genomes]
rs10110724	0.80[AMR][1000 genomes]
rs10110841	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11775081	0.80[EUR][1000 genomes]
rs11775997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11776117	0.81[EUR][1000 genomes]
rs11777995	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11782854	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11782857	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12375412	0.81[EUR][1000 genomes]
rs13251851	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261017	0.80[EUR][1000 genomes]
rs1354817	0.81[EUR][1000 genomes]
rs1395615	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1507082	0.80[EUR][1000 genomes]
rs1532936	0.81[ASN][1000 genomes]
rs2089409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135750	0.80[ASN][1000 genomes]
rs2280829	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280830	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2970743	0.83[ASN][1000 genomes]
rs2970749	0.81[ASN][1000 genomes]
rs35550805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4455813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4531043	0.81[EUR][1000 genomes]
rs4623403	0.80[EUR][1000 genomes]
rs6471689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471690	0.81[EUR][1000 genomes]
rs7010475	0.81[EUR][1000 genomes]
rs723314	0.83[ASN][1000 genomes]
rs7834557	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs880058	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59123600-59125400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:59123800-59125400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:59123800-59125600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:59124400-59125400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59124800-59125400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:59125000-59126000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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