Variant report

Variant	rs11782854
Chromosome Location	chr8:59130861-59130862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59129648..59132534-chr8:59134074..59137163,3	MCF-7	breast:
2	chr8:59129638..59131864-chr8:59132963..59136157,3	MCF-7	breast:
3	chr8:59129262..59132109-chr8:59140348..59143090,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10086052	0.81[EUR][1000 genomes]
rs10094616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096039	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10096199	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10102197	0.81[EUR][1000 genomes]
rs10107491	0.81[EUR][1000 genomes]
rs10109119	0.80[EUR][1000 genomes]
rs10110724	0.82[AMR][1000 genomes]
rs10110841	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11775081	0.80[EUR][1000 genomes]
rs11775997	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776117	0.81[EUR][1000 genomes]
rs11777995	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11782857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375262	0.81[AMR][1000 genomes]
rs12375412	0.81[EUR][1000 genomes]
rs13251851	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13261017	0.80[EUR][1000 genomes]
rs1354817	0.81[EUR][1000 genomes]
rs1395615	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1507082	0.80[EUR][1000 genomes]
rs1532936	0.80[ASN][1000 genomes]
rs2089409	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2089410	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2280829	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2280830	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2970743	0.81[ASN][1000 genomes]
rs2970749	0.83[ASN][1000 genomes]
rs35550805	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4455813	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4531043	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4623403	0.80[EUR][1000 genomes]
rs6471689	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471690	0.81[EUR][1000 genomes]
rs7010475	0.81[EUR][1000 genomes]
rs723314	0.81[ASN][1000 genomes]
rs7834557	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs880058	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59125400-59132800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59130000-59131200	Enhancers	Hela-S3	cervix
3	chr8:59130200-59131000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59130200-59131000	Enhancers	NHDF-Ad	bronchial
5	chr8:59130200-59131200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:59130200-59131200	Enhancers	HMEC	breast
7	chr8:59130200-59131400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:59130200-59131600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:59130600-59133200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr8:59130800-59131200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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