Variant report

Variant	rs10810007
Chromosome Location	chr9:13719314-13719315
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1034163	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10435725	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810005	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810009	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810010	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961191	0.84[EUR][1000 genomes]
rs10961195	0.87[EUR][1000 genomes]
rs10961196	0.82[EUR][1000 genomes]
rs10961198	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10961199	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10961205	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10961207	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11998882	0.86[EUR][1000 genomes]
rs12237961	0.86[EUR][1000 genomes]
rs1360560	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1408314	0.81[EUR][1000 genomes]
rs1475671	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1556494	0.96[EUR][1000 genomes]
rs1575551	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1575552	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1590402	0.82[EUR][1000 genomes]
rs1590403	0.82[EUR][1000 genomes]
rs17193343	0.82[EUR][1000 genomes]
rs17193379	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17194667	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1831677	0.88[AFR][1000 genomes]
rs1998584	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1998585	0.92[EUR][1000 genomes]
rs2382403	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382407	0.88[AFR][1000 genomes]
rs4486298	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs504564	0.81[ASN][1000 genomes]
rs510076	0.81[ASN][1000 genomes]
rs537601	0.81[ASN][1000 genomes]
rs55688876	0.80[EUR][1000 genomes]
rs55992305	0.83[EUR][1000 genomes]
rs57228055	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61572888	0.88[EUR][1000 genomes]
rs616906	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs628475	0.81[ASN][1000 genomes]
rs629819	0.81[ASN][1000 genomes]
rs630700	0.82[ASN][1000 genomes]
rs630740	0.81[ASN][1000 genomes]
rs631061	0.81[ASN][1000 genomes]
rs631554	0.81[ASN][1000 genomes]
rs6474791	0.82[EUR][1000 genomes]
rs7025981	0.80[EUR][1000 genomes]
rs7041117	0.88[EUR][1000 genomes]
rs7041906	0.81[EUR][1000 genomes]
rs7045171	0.81[EUR][1000 genomes]
rs7847285	0.88[EUR][1000 genomes]
rs7847902	0.85[EUR][1000 genomes]
rs7850099	0.83[EUR][1000 genomes]
rs7855395	0.87[EUR][1000 genomes]
rs7872836	0.86[EUR][1000 genomes]
rs7873377	0.83[EUR][1000 genomes]
rs7873424	0.83[EUR][1000 genomes]
rs7876011	0.86[EUR][1000 genomes]
rs8192964	0.81[EUR][1000 genomes]
rs8192971	0.85[EUR][1000 genomes]
rs8192977	0.87[EUR][1000 genomes]
rs8192996	0.90[EUR][1000 genomes]
rs942389	0.81[EUR][1000 genomes]
rs967980	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13715600-13719400	Weak transcription	Psoas Muscle	Psoas
2	chr9:13716400-13720600	Enhancers	Fetal Muscle Leg	muscle
3	chr9:13716600-13720800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:13716800-13720800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:13716800-13722000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:13717000-13720000	Enhancers	NHEK	skin
7	chr9:13717200-13720800	Enhancers	NHLF	lung
8	chr9:13717200-13721600	Enhancers	NH-A	brain
9	chr9:13717400-13719400	Enhancers	HSMM	muscle
10	chr9:13717400-13719600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:13717400-13719600	Weak transcription	Aorta	Aorta
12	chr9:13717400-13721000	Enhancers	Osteobl	bone
13	chr9:13717400-13722200	Enhancers	HSMMtube	muscle
14	chr9:13717600-13719400	Weak transcription	Fetal Brain Female	brain
15	chr9:13717600-13719400	Weak transcription	Left Ventricle	heart
16	chr9:13717600-13719400	Weak transcription	Ovary	ovary
17	chr9:13717600-13719400	Weak transcription	Right Atrium	heart
18	chr9:13717600-13719600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:13717600-13719600	Weak transcription	Brain Anterior Caudate	brain
20	chr9:13717600-13719800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:13717600-13720000	Weak transcription	Adipose Nuclei	Adipose
22	chr9:13717600-13720000	Weak transcription	Right Ventricle	heart
23	chr9:13717600-13728000	Weak transcription	HUVEC	blood vessel
24	chr9:13717800-13719400	Weak transcription	NHDF-Ad	bronchial
25	chr9:13717800-13720000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:13717800-13721200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:13718000-13719400	Weak transcription	Fetal Stomach	stomach
28	chr9:13718000-13720800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:13718200-13719400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:13718200-13719600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:13718200-13720600	Enhancers	Fetal Lung	lung
32	chr9:13718200-13727400	Weak transcription	Fetal Brain Male	brain
33	chr9:13718400-13719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:13718400-13719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:13718400-13721800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr9:13718600-13719800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:13718600-13720800	Enhancers	HMEC	breast
38	chr9:13718800-13719600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:13718800-13719600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr9:13719000-13719400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:13719000-13720600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:13719200-13720800	Enhancers	Muscle Satellite Cultured Cells	--

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