Variant report

Variant	rs10961199
Chromosome Location	chr9:13714854-13714855
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1034163	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10435725	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10810005	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10810007	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810009	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810010	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10961191	0.87[EUR][1000 genomes]
rs10961195	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10961196	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10961198	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10961205	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10961207	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11998882	0.89[EUR][1000 genomes]
rs12237961	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1360560	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1408314	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1475671	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1556494	0.96[EUR][1000 genomes]
rs1575551	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1575552	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1590402	0.86[EUR][1000 genomes]
rs1590403	0.86[EUR][1000 genomes]
rs17193343	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17193379	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17194667	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1998584	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998585	0.96[EUR][1000 genomes]
rs2382403	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4486298	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs504564	0.87[ASN][1000 genomes]
rs510076	0.87[ASN][1000 genomes]
rs537601	0.87[ASN][1000 genomes]
rs55688876	0.84[EUR][1000 genomes]
rs55992305	0.85[EUR][1000 genomes]
rs57228055	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61572888	0.92[EUR][1000 genomes]
rs616906	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs626778	0.84[ASN][1000 genomes]
rs628475	0.87[ASN][1000 genomes]
rs629819	0.87[ASN][1000 genomes]
rs630700	0.89[ASN][1000 genomes]
rs630740	0.87[ASN][1000 genomes]
rs631061	0.87[ASN][1000 genomes]
rs631554	0.87[ASN][1000 genomes]
rs6474791	0.86[EUR][1000 genomes]
rs7020018	0.80[EUR][1000 genomes]
rs7025981	0.83[EUR][1000 genomes]
rs7041117	0.91[EUR][1000 genomes]
rs7041906	0.83[EUR][1000 genomes]
rs7045171	0.83[EUR][1000 genomes]
rs7847285	0.87[EUR][1000 genomes]
rs7847902	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7849359	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7850099	0.86[EUR][1000 genomes]
rs7852661	0.82[EUR][1000 genomes]
rs7855395	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7872836	0.88[EUR][1000 genomes]
rs7873377	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7873424	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7876011	0.88[EUR][1000 genomes]
rs8192964	0.83[EUR][1000 genomes]
rs8192971	0.87[EUR][1000 genomes]
rs8192977	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8192996	0.94[EUR][1000 genomes]
rs942389	0.83[EUR][1000 genomes]
rs967980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892589	chr9:13689066-13715328	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13708200-13716600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13709000-13716000	Weak transcription	HUVEC	blood vessel
3	chr9:13709400-13716800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:13714800-13715600	Enhancers	Psoas Muscle	Psoas
5	chr9:13714800-13718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:13714800-13718200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links