Variant report

Variant	rs626778
Chromosome Location	chr9:13705679-13705680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10115686	0.82[EUR][1000 genomes]
rs10115710	0.84[EUR][1000 genomes]
rs10115713	0.84[EUR][1000 genomes]
rs10118917	0.84[EUR][1000 genomes]
rs10120807	0.86[EUR][1000 genomes]
rs10756490	0.83[EUR][1000 genomes]
rs10810005	0.88[ASN][1000 genomes]
rs10961196	0.88[ASN][1000 genomes]
rs10961198	0.83[ASN][1000 genomes]
rs10961199	0.84[ASN][1000 genomes]
rs10961203	0.86[EUR][1000 genomes]
rs10961205	0.80[ASN][1000 genomes]
rs1360561	0.90[EUR][1000 genomes]
rs1443848	0.86[EUR][1000 genomes]
rs1443849	0.89[EUR][1000 genomes]
rs1475671	0.89[ASN][1000 genomes]
rs1556492	0.81[EUR][1000 genomes]
rs1575551	0.85[ASN][1000 genomes]
rs1575552	0.86[ASN][1000 genomes]
rs17194667	0.92[ASN][1000 genomes]
rs1998584	0.88[ASN][1000 genomes]
rs2165951	0.90[EUR][1000 genomes]
rs2382403	0.88[ASN][1000 genomes]
rs4486298	0.83[ASN][1000 genomes]
rs4536526	0.84[EUR][1000 genomes]
rs4577151	0.84[EUR][1000 genomes]
rs489504	0.93[EUR][1000 genomes]
rs504564	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510076	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs524126	0.96[EUR][1000 genomes]
rs537601	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs571485	0.85[EUR][1000 genomes]
rs57228055	0.86[ASN][1000 genomes]
rs611629	0.85[EUR][1000 genomes]
rs616906	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs628475	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs629819	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs630700	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs630740	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs631061	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs631554	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs688784	0.86[EUR][1000 genomes]
rs7039168	0.92[EUR][1000 genomes]
rs7872845	0.84[EUR][1000 genomes]
rs7873043	0.80[EUR][1000 genomes]
rs7873063	0.84[EUR][1000 genomes]
rs789585	0.95[EUR][1000 genomes]
rs789586	0.90[EUR][1000 genomes]
rs967980	0.83[ASN][1000 genomes]
rs979202	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892589	chr9:13689066-13715328	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13704400-13706600	Enhancers	HSMM	muscle
2	chr9:13705000-13706600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:13705200-13705800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13705200-13706200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:13705200-13706400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:13705200-13706600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:13705200-13706600	Enhancers	Adipose Nuclei	Adipose
8	chr9:13705200-13706600	Enhancers	HSMMtube	muscle
9	chr9:13705200-13706600	Enhancers	NHDF-Ad	bronchial
10	chr9:13705200-13706800	Enhancers	NHLF	lung
11	chr9:13705200-13707400	Enhancers	HUVEC	blood vessel
12	chr9:13705200-13708000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:13705400-13706200	Enhancers	Placenta	Placenta
14	chr9:13705400-13706400	Enhancers	Fetal Lung	lung
15	chr9:13705400-13706400	Enhancers	Left Ventricle	heart
16	chr9:13705400-13706600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:13705400-13706600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:13705400-13706600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:13705400-13706600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:13705400-13708800	Enhancers	NH-A	brain
21	chr9:13705600-13705800	Flanking Active TSS	Osteobl	bone
22	chr9:13705600-13706200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr9:13705600-13706200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:13705600-13706200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:13705600-13706400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:13705600-13706600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:13705600-13707800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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