Variant report

Variant	rs10961203
Chromosome Location	chr9:13720160-13720161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10115686	0.85[EUR][1000 genomes]
rs10115710	0.84[EUR][1000 genomes]
rs10115713	0.84[EUR][1000 genomes]
rs10118917	0.84[EUR][1000 genomes]
rs10120807	0.87[EUR][1000 genomes]
rs10756490	0.83[EUR][1000 genomes]
rs1360561	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1443848	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443849	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1556492	0.83[EUR][1000 genomes]
rs1556494	0.86[ASN][1000 genomes]
rs2165951	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4536526	0.84[EUR][1000 genomes]
rs4577151	0.84[EUR][1000 genomes]
rs489504	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs504564	0.92[EUR][1000 genomes]
rs510076	0.92[EUR][1000 genomes]
rs524126	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs537601	0.92[EUR][1000 genomes]
rs571485	0.82[EUR][1000 genomes]
rs611629	0.82[EUR][1000 genomes]
rs616906	0.92[CEU][hapmap];0.97[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs626778	0.86[EUR][1000 genomes]
rs628475	0.92[EUR][1000 genomes]
rs629819	0.92[EUR][1000 genomes]
rs630700	0.91[EUR][1000 genomes]
rs630740	0.92[EUR][1000 genomes]
rs631061	0.91[EUR][1000 genomes]
rs631554	0.92[EUR][1000 genomes]
rs688784	0.87[EUR][1000 genomes]
rs7039168	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs713506	0.84[EUR][1000 genomes]
rs7847285	0.81[ASN][1000 genomes]
rs7872845	0.84[EUR][1000 genomes]
rs7873043	0.87[EUR][1000 genomes]
rs7873063	0.84[EUR][1000 genomes]
rs789585	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs789586	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs979202	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13716400-13720600	Enhancers	Fetal Muscle Leg	muscle
2	chr9:13716600-13720800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:13716800-13720800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:13716800-13722000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:13717200-13720800	Enhancers	NHLF	lung
6	chr9:13717200-13721600	Enhancers	NH-A	brain
7	chr9:13717400-13721000	Enhancers	Osteobl	bone
8	chr9:13717400-13722200	Enhancers	HSMMtube	muscle
9	chr9:13717600-13728000	Weak transcription	HUVEC	blood vessel
10	chr9:13717800-13721200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:13718000-13720800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:13718200-13720600	Enhancers	Fetal Lung	lung
13	chr9:13718200-13727400	Weak transcription	Fetal Brain Male	brain
14	chr9:13718400-13721800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:13718600-13720800	Enhancers	HMEC	breast
16	chr9:13719000-13720600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:13719200-13720800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:13719400-13720200	Enhancers	Ovary	ovary
19	chr9:13719400-13720200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:13719400-13720400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:13719400-13720400	Enhancers	Fetal Stomach	stomach
22	chr9:13719400-13720600	Enhancers	Fetal Brain Female	brain
23	chr9:13719400-13722000	Enhancers	NHDF-Ad	bronchial
24	chr9:13719600-13720200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr9:13719600-13720200	Enhancers	Aorta	Aorta
26	chr9:13719600-13720600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr9:13719800-13720200	Enhancers	Stomach Smooth Muscle	stomach
28	chr9:13719800-13721600	Enhancers	HSMM	muscle
29	chr9:13720000-13720200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:13720000-13720200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:13720000-13720200	Enhancers	Adipose Nuclei	Adipose
32	chr9:13720000-13720200	Enhancers	Right Ventricle	heart
33	chr9:13720000-13720400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:13720000-13720600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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