Variant report

Variant	rs1360561
Chromosome Location	chr9:13717300-13717301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10115686	0.85[EUR][1000 genomes]
rs10115710	0.86[EUR][1000 genomes]
rs10115713	0.86[EUR][1000 genomes]
rs10118917	0.86[EUR][1000 genomes]
rs10120807	0.89[EUR][1000 genomes]
rs10756490	0.85[EUR][1000 genomes]
rs10961203	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1443848	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443849	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1556492	0.85[EUR][1000 genomes]
rs1556494	0.86[ASN][1000 genomes]
rs2165951	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4536526	0.86[EUR][1000 genomes]
rs4577151	0.86[EUR][1000 genomes]
rs489504	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs504564	0.96[EUR][1000 genomes]
rs510076	0.96[EUR][1000 genomes]
rs524126	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs537601	0.96[EUR][1000 genomes]
rs571485	0.87[EUR][1000 genomes]
rs611629	0.87[EUR][1000 genomes]
rs616906	0.92[CEU][hapmap];0.97[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs626778	0.90[EUR][1000 genomes]
rs628475	0.96[EUR][1000 genomes]
rs629819	0.96[EUR][1000 genomes]
rs630700	0.96[EUR][1000 genomes]
rs630740	0.96[EUR][1000 genomes]
rs631061	0.95[EUR][1000 genomes]
rs631554	0.96[EUR][1000 genomes]
rs688784	0.87[EUR][1000 genomes]
rs7039168	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs713506	0.86[EUR][1000 genomes]
rs7847285	0.80[ASN][1000 genomes]
rs7872845	0.86[EUR][1000 genomes]
rs7873043	0.87[EUR][1000 genomes]
rs7873063	0.86[EUR][1000 genomes]
rs789585	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs789586	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192996	0.81[ASN][1000 genomes]
rs979202	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13714800-13718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:13714800-13718200	Enhancers	Fetal Kidney	kidney
3	chr9:13715600-13719400	Weak transcription	Psoas Muscle	Psoas
4	chr9:13716000-13717600	Enhancers	HUVEC	blood vessel
5	chr9:13716400-13717600	Enhancers	Ovary	ovary
6	chr9:13716400-13720600	Enhancers	Fetal Muscle Leg	muscle
7	chr9:13716600-13717400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:13716600-13717600	Enhancers	Adipose Nuclei	Adipose
9	chr9:13716600-13717600	Enhancers	Brain Anterior Caudate	brain
10	chr9:13716600-13717800	Enhancers	Brain Germinal Matrix	brain
11	chr9:13716600-13718000	Enhancers	Fetal Stomach	stomach
12	chr9:13716600-13718200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:13716600-13718200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:13716600-13718200	Enhancers	HMEC	breast
15	chr9:13716600-13718800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:13716600-13720800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:13716800-13717400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:13716800-13717400	Flanking Active TSS	Fetal Brain Female	brain
19	chr9:13716800-13717600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:13716800-13717600	Enhancers	Fetal Heart	heart
21	chr9:13716800-13717600	Flanking Active TSS	Fetal Lung	lung
22	chr9:13716800-13717600	Enhancers	Left Ventricle	heart
23	chr9:13716800-13717600	Enhancers	Right Ventricle	heart
24	chr9:13716800-13717600	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:13716800-13717800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:13716800-13718200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:13716800-13718200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:13716800-13718200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr9:13716800-13718400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr9:13716800-13718600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr9:13716800-13719000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr9:13716800-13720800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:13716800-13722000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:13717000-13717400	Bivalent Enhancer	Osteobl	bone
35	chr9:13717000-13717800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:13717000-13717800	Enhancers	Brain Cingulate Gyrus	brain
37	chr9:13717000-13717800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr9:13717000-13718400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:13717000-13718400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:13717000-13720000	Enhancers	NHEK	skin
41	chr9:13717200-13717400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:13717200-13717400	Enhancers	Aorta	Aorta
43	chr9:13717200-13717400	Enhancers	Fetal Brain Male	brain
44	chr9:13717200-13717600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr9:13717200-13717600	Enhancers	Right Atrium	heart
46	chr9:13717200-13718200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:13717200-13720800	Enhancers	NHLF	lung
48	chr9:13717200-13721600	Enhancers	NH-A	brain

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