Variant report

Variant	rs1443849
Chromosome Location	chr9:13729029-13729030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10115686	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10115710	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10115713	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10118917	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10120807	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756490	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10961203	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1360561	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1443848	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1556492	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2165951	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4536526	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4577151	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs489504	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs504564	0.95[EUR][1000 genomes]
rs510076	0.95[EUR][1000 genomes]
rs524126	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537601	0.95[EUR][1000 genomes]
rs571485	0.84[EUR][1000 genomes]
rs611629	0.84[EUR][1000 genomes]
rs61572888	0.85[ASN][1000 genomes]
rs616906	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs626778	0.89[EUR][1000 genomes]
rs628475	0.95[EUR][1000 genomes]
rs629819	0.95[EUR][1000 genomes]
rs630700	0.94[EUR][1000 genomes]
rs630740	0.95[EUR][1000 genomes]
rs631061	0.93[EUR][1000 genomes]
rs631554	0.95[EUR][1000 genomes]
rs688784	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7039168	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs713505	0.87[ASN][1000 genomes]
rs713506	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7847285	0.89[ASN][1000 genomes]
rs7872845	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7873043	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7873063	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7873532	0.84[ASN][1000 genomes]
rs7873544	0.84[ASN][1000 genomes]
rs789585	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs789586	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8192996	0.87[ASN][1000 genomes]
rs979202	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13720800-13729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13727200-13730000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr9:13727200-13730200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:13727400-13729800	Enhancers	Fetal Brain Male	brain
5	chr9:13728000-13729800	Enhancers	Psoas Muscle	Psoas
6	chr9:13728200-13729200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:13728200-13729200	Enhancers	Right Atrium	heart
8	chr9:13728200-13729400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:13728200-13729400	Enhancers	Esophagus	oesophagus
10	chr9:13728200-13729800	Enhancers	Fetal Muscle Leg	muscle
11	chr9:13728400-13729600	Enhancers	Right Ventricle	heart
12	chr9:13728600-13729600	Weak transcription	Fetal Brain Female	brain
13	chr9:13729000-13729200	Enhancers	Left Ventricle	heart
14	chr9:13729000-13729600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:13729000-13729800	Enhancers	HMEC	breast

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