Variant report

Variant	rs489504
Chromosome Location	chr9:13715063-13715064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10115686	0.83[EUR][1000 genomes]
rs10115710	0.84[EUR][1000 genomes]
rs10115713	0.84[EUR][1000 genomes]
rs10118917	0.84[EUR][1000 genomes]
rs10120807	0.87[EUR][1000 genomes]
rs10756490	0.84[EUR][1000 genomes]
rs10961203	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360561	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443848	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1443849	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1556492	0.82[EUR][1000 genomes]
rs1556494	0.85[ASN][1000 genomes]
rs2165951	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4536526	0.84[EUR][1000 genomes]
rs4577151	0.84[EUR][1000 genomes]
rs504564	0.99[EUR][1000 genomes]
rs510076	0.99[EUR][1000 genomes]
rs524126	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs537601	0.99[EUR][1000 genomes]
rs571485	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs611629	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61572888	0.83[ASN][1000 genomes]
rs616906	0.92[CEU][hapmap];0.97[GIH][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs626778	0.93[EUR][1000 genomes]
rs628475	0.99[EUR][1000 genomes]
rs629819	0.99[EUR][1000 genomes]
rs630700	0.99[EUR][1000 genomes]
rs630740	0.99[EUR][1000 genomes]
rs631061	0.98[EUR][1000 genomes]
rs631554	0.99[EUR][1000 genomes]
rs688784	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7039168	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs713506	0.84[EUR][1000 genomes]
rs7847285	0.81[ASN][1000 genomes]
rs7872845	0.84[EUR][1000 genomes]
rs7873043	0.85[EUR][1000 genomes]
rs7873063	0.84[EUR][1000 genomes]
rs789585	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs789586	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8192996	0.85[ASN][1000 genomes]
rs979202	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892589	chr9:13689066-13715328	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13708200-13716600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13709000-13716000	Weak transcription	HUVEC	blood vessel
3	chr9:13709400-13716800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:13714800-13715600	Enhancers	Psoas Muscle	Psoas
5	chr9:13714800-13718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:13714800-13718200	Enhancers	Fetal Kidney	kidney
7	chr9:13715000-13715800	Enhancers	Fetal Lung	lung

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