Variant report

Variant	rs10810010
Chromosome Location	chr9:13726670-13726671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13726448..13728471-chr9:13729795..13732629,2	MCF-7	breast:
2	chr9:13725307..13728177-chr9:13730804..13732706,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1034163	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10435725	0.85[EUR][1000 genomes]
rs10810005	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810007	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810009	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10961191	0.85[EUR][1000 genomes]
rs10961195	0.85[EUR][1000 genomes]
rs10961196	0.82[EUR][1000 genomes]
rs10961198	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10961199	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10961205	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10961207	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11998882	0.84[EUR][1000 genomes]
rs12237961	0.86[EUR][1000 genomes]
rs1360560	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1408314	0.80[EUR][1000 genomes]
rs1475671	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1556494	0.96[EUR][1000 genomes]
rs1575551	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1575552	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1590402	0.81[EUR][1000 genomes]
rs1590403	0.81[EUR][1000 genomes]
rs17193379	0.83[EUR][1000 genomes]
rs17194667	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1998584	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1998585	0.93[EUR][1000 genomes]
rs2382403	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4486298	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs504564	0.80[ASN][1000 genomes]
rs510076	0.80[ASN][1000 genomes]
rs537601	0.80[ASN][1000 genomes]
rs55992305	0.83[EUR][1000 genomes]
rs57228055	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61572888	0.86[EUR][1000 genomes]
rs616906	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap]
rs628475	0.80[ASN][1000 genomes]
rs629819	0.80[ASN][1000 genomes]
rs630700	0.82[ASN][1000 genomes]
rs630740	0.80[ASN][1000 genomes]
rs631061	0.80[ASN][1000 genomes]
rs631554	0.80[ASN][1000 genomes]
rs6474791	0.81[EUR][1000 genomes]
rs7025981	0.81[EUR][1000 genomes]
rs7041117	0.86[EUR][1000 genomes]
rs7847285	0.90[EUR][1000 genomes]
rs7847902	0.84[EUR][1000 genomes]
rs7849359	0.80[EUR][1000 genomes]
rs7850099	0.81[EUR][1000 genomes]
rs7855395	0.85[EUR][1000 genomes]
rs7872836	0.86[EUR][1000 genomes]
rs7873377	0.84[EUR][1000 genomes]
rs7873424	0.84[EUR][1000 genomes]
rs7876011	0.83[EUR][1000 genomes]
rs8192971	0.82[EUR][1000 genomes]
rs8192977	0.85[EUR][1000 genomes]
rs8192996	0.86[EUR][1000 genomes]
rs967980	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13717600-13728000	Weak transcription	HUVEC	blood vessel
2	chr9:13718200-13727400	Weak transcription	Fetal Brain Male	brain
3	chr9:13720800-13729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:13726400-13726800	Enhancers	Fetal Muscle Leg	muscle
5	chr9:13726600-13727400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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