Variant report

Variant	rs10810073
Chromosome Location	chr9:13992283-13992284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1022762	0.86[EUR][1000 genomes]
rs10738350	0.91[CEU][hapmap]
rs10810064	0.91[CEU][hapmap]
rs10810065	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10810067	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810074	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10961313	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10961319	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12001776	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1853195	1.00[YRI][hapmap]
rs1885429	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2181074	0.84[EUR][1000 genomes]
rs6474805	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7021723	0.89[EUR][1000 genomes]
rs7025591	0.85[ASN][1000 genomes]
rs7848517	0.87[EUR][1000 genomes]
rs7859777	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10810073	C9orf150	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13988600-13993600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:13990400-13994200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:13991200-13993200	Enhancers	Hela-S3	cervix
4	chr9:13991600-13992800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:13991600-13993000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:13991600-13994600	Enhancers	Psoas Muscle	Psoas
7	chr9:13991600-13994800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr9:13991600-13995000	Enhancers	Fetal Muscle Leg	muscle
9	chr9:13991800-13992400	Enhancers	HSMMtube	muscle
10	chr9:13991800-13993000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:13991800-13994000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:13991800-13994000	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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