Variant report
| Variant | rs10810074 |
|---|---|
| Chromosome Location | chr9:13995203-13995204 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1022762 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10810065 | 1.00[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs10810067 | 0.81[EUR][1000 genomes] |
| rs10810071 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10810072 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10810073 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10961313 | 0.81[EUR][1000 genomes] |
| rs10961319 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11562181 | 0.89[AMR][1000 genomes] |
| rs12001776 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1853195 | 1.00[YRI][hapmap] |
| rs1885429 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2093429 | 0.84[ASN][1000 genomes] |
| rs2104156 | 0.81[ASN][1000 genomes] |
| rs2181074 | 0.85[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4741342 | 0.83[ASN][1000 genomes] |
| rs6474805 | 1.00[YRI][hapmap] |
| rs7021723 | 0.90[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7848517 | 0.91[EUR][1000 genomes] |
| rs7859777 | 0.85[AFR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv892593 | chr9:13948798-14233159 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv892594 | chr9:13970372-14005286 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13994000-14027000 | Weak transcription | Aorta | Aorta |
