Variant report

Variant	rs1885429
Chromosome Location	chr9:13993595-13993596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1022762	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10738350	0.91[CEU][hapmap]
rs10810064	0.91[CEU][hapmap]
rs10810065	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs10810067	0.83[EUR][1000 genomes]
rs10810071	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810072	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810073	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810074	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10961313	0.83[EUR][1000 genomes]
rs10961319	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11562181	0.88[AMR][1000 genomes]
rs12001776	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1853195	1.00[YRI][hapmap]
rs2181074	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6474805	1.00[YRI][hapmap]
rs7021723	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7848517	0.89[EUR][1000 genomes]
rs7859777	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1885429	C9orf150	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13988600-13993600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:13990400-13994200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:13991600-13994600	Enhancers	Psoas Muscle	Psoas
4	chr9:13991600-13994800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:13991600-13995000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:13991800-13994000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:13991800-13994000	Enhancers	Aorta	Aorta
8	chr9:13992800-13994800	Enhancers	Fetal Kidney	kidney
9	chr9:13993200-13994000	Enhancers	Brain Anterior Caudate	brain
10	chr9:13993200-13994600	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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