Variant report

Variant	rs10815349
Chromosome Location	chr9:6080298-6080299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:6074105..6076880-chr9:6078281..6080454,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114267	0.80[ASN][1000 genomes]
rs10815350	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10975424	0.85[EUR][1000 genomes]
rs10975425	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10975426	0.97[ASN][1000 genomes]
rs10975436	0.98[ASN][1000 genomes]
rs10975437	0.98[ASN][1000 genomes]
rs10975441	0.97[ASN][1000 genomes]
rs10975446	0.93[ASN][1000 genomes]
rs10975451	0.90[ASN][1000 genomes]
rs10975454	0.87[ASN][1000 genomes]
rs11526367	0.94[ASN][1000 genomes]
rs11793017	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1411341	0.97[ASN][1000 genomes]
rs1591045	0.80[ASN][1000 genomes]
rs2069264	0.90[ASN][1000 genomes]
rs2104758	0.94[ASN][1000 genomes]
rs2149980	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2183352	0.94[ASN][1000 genomes]
rs340897	0.82[ASN][1000 genomes]
rs381486	0.80[ASN][1000 genomes]
rs391813	0.82[ASN][1000 genomes]
rs393410	0.82[ASN][1000 genomes]
rs396183	0.82[ASN][1000 genomes]
rs397542	0.80[ASN][1000 genomes]
rs405594	0.82[ASN][1000 genomes]
rs414320	0.82[ASN][1000 genomes]
rs418014	0.80[ASN][1000 genomes]
rs434521	0.80[ASN][1000 genomes]
rs439190	0.82[ASN][1000 genomes]
rs440366	0.82[ASN][1000 genomes]
rs447778	0.80[ASN][1000 genomes]
rs4740837	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4740839	0.96[ASN][1000 genomes]
rs55817693	0.94[ASN][1000 genomes]
rs57993622	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6477037	0.97[ASN][1000 genomes]
rs6477040	0.90[ASN][1000 genomes]
rs6477041	0.81[ASN][1000 genomes]
rs67217130	0.93[ASN][1000 genomes]
rs67478282	0.98[ASN][1000 genomes]
rs68075537	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs694965	0.80[ASN][1000 genomes]
rs7024136	0.98[ASN][1000 genomes]
rs7024235	0.98[ASN][1000 genomes]
rs7024340	0.97[ASN][1000 genomes]
rs7024677	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7040888	0.98[ASN][1000 genomes]
rs7043663	0.98[ASN][1000 genomes]
rs7048296	0.94[ASN][1000 genomes]
rs7856231	0.97[ASN][1000 genomes]
rs7869061	0.98[ASN][1000 genomes]
rs7869064	0.98[ASN][1000 genomes]
rs7869888	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1015450	chr9:5915640-6114652	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv613205	chr9:6032924-6332901	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv916394	chr9:6055497-6322471	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6078200-6080600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:6079400-6080600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:6079400-6081000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:6079400-6081000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr9:6079400-6081000	Active TSS	Stomach Smooth Muscle	stomach
6	chr9:6079400-6081200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:6079400-6081200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:6079600-6080400	Active TSS	HSMMtube	muscle
9	chr9:6079600-6080600	Active TSS	Adipose Nuclei	Adipose
10	chr9:6079600-6080600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr9:6079600-6080600	Active TSS	K562	blood
12	chr9:6079600-6080800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:6079600-6080800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:6079600-6080800	Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr9:6079600-6080800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:6079600-6080800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:6079600-6080800	Active TSS	Brain Hippocampus Middle	brain
18	chr9:6079600-6080800	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:6079600-6080800	Active TSS	Colonic Mucosa	Colon
20	chr9:6079600-6080800	Active TSS	Right Atrium	heart
21	chr9:6079600-6080800	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr9:6079600-6081000	Active TSS	Fetal Brain Female	brain
23	chr9:6079600-6081000	Active TSS	Fetal Kidney	kidney
24	chr9:6079800-6080400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:6079800-6080400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr9:6079800-6080400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr9:6079800-6080400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:6079800-6080400	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr9:6079800-6080600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:6079800-6080600	Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr9:6079800-6080600	Active TSS	HUVEC	blood vessel
32	chr9:6079800-6080800	Active TSS	H9 Cell Line	embryonic stem cell
33	chr9:6079800-6080800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:6079800-6080800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr9:6079800-6080800	Active TSS	Primary B cells from cord blood	blood
36	chr9:6079800-6080800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr9:6079800-6080800	Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr9:6079800-6080800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:6079800-6080800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:6079800-6080800	Active TSS	Brain Angular Gyrus	brain
41	chr9:6079800-6080800	Active TSS	Brain Anterior Caudate	brain
42	chr9:6079800-6080800	Active TSS	Colon Smooth Muscle	Colon
43	chr9:6079800-6080800	Active TSS	Fetal Intestine Large	intestine
44	chr9:6079800-6080800	Active TSS	Fetal Muscle Trunk	muscle
45	chr9:6079800-6080800	Active TSS	Psoas Muscle	Psoas
46	chr9:6079800-6080800	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr9:6079800-6080800	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr9:6079800-6080800	Active TSS	NHLF	lung
49	chr9:6079800-6081000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:6079800-6081000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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