Variant report

Variant	rs7024136
Chromosome Location	chr9:6110470-6110471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114267	0.82[ASN][1000 genomes]
rs10815349	0.98[ASN][1000 genomes]
rs10815350	0.98[ASN][1000 genomes]
rs10975425	0.88[ASN][1000 genomes]
rs10975426	0.96[ASN][1000 genomes]
rs10975436	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10975437	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10975441	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10975446	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10975451	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10975454	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11526367	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11793017	0.88[ASN][1000 genomes]
rs1411341	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1591045	0.82[ASN][1000 genomes]
rs2069264	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2104758	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149980	1.00[ASN][1000 genomes]
rs2183352	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2381385	0.81[ASN][1000 genomes]
rs340897	0.83[ASN][1000 genomes]
rs381486	0.82[ASN][1000 genomes]
rs391813	0.83[ASN][1000 genomes]
rs393410	0.83[ASN][1000 genomes]
rs396183	0.83[ASN][1000 genomes]
rs397542	0.82[ASN][1000 genomes]
rs405594	0.83[ASN][1000 genomes]
rs414320	0.83[ASN][1000 genomes]
rs418014	0.82[ASN][1000 genomes]
rs434521	0.82[ASN][1000 genomes]
rs439190	0.83[ASN][1000 genomes]
rs440366	0.83[ASN][1000 genomes]
rs447778	0.82[ASN][1000 genomes]
rs4740837	0.98[ASN][1000 genomes]
rs4740839	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55817693	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57993622	0.98[ASN][1000 genomes]
rs6477037	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6477040	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6477041	0.82[ASN][1000 genomes]
rs67217130	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67478282	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68075537	1.00[ASN][1000 genomes]
rs694965	0.82[ASN][1000 genomes]
rs7024235	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024340	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7024677	0.97[ASN][1000 genomes]
rs7040888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043663	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048296	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7856231	0.98[ASN][1000 genomes]
rs7869061	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869064	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869888	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1015450	chr9:5915640-6114652	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv613205	chr9:6032924-6332901	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv916394	chr9:6055497-6322471	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2761482	chr9:6084602-6134787	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892157	chr9:6093790-6322415	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv831496	chr9:6101763-6285088	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6107200-6111200	Enhancers	Hela-S3	cervix
2	chr9:6107200-6114600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:6107600-6113400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:6108800-6110600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:6108800-6110600	Enhancers	NHDF-Ad	bronchial
6	chr9:6109400-6110600	Enhancers	HSMM	muscle
7	chr9:6109400-6115200	Weak transcription	Gastric	stomach
8	chr9:6110000-6111000	Enhancers	Fetal Thymus	thymus
9	chr9:6110000-6111000	Enhancers	Thymus	Thymus
10	chr9:6110200-6110600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:6110200-6110600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr9:6110200-6110600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr9:6110400-6110800	Weak transcription	HSMMtube	muscle
14	chr9:6110400-6111000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:6110400-6111000	Enhancers	HUVEC	blood vessel

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