Variant report

Variant	rs57993622
Chromosome Location	chr9:6093438-6093439
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10114267	0.80[ASN][1000 genomes]
rs10815349	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10815350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10975425	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10975426	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10975436	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10975437	0.98[ASN][1000 genomes]
rs10975441	0.97[ASN][1000 genomes]
rs10975446	0.93[ASN][1000 genomes]
rs10975451	0.90[ASN][1000 genomes]
rs10975454	0.87[ASN][1000 genomes]
rs11526367	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11793017	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1411341	0.97[ASN][1000 genomes]
rs1591045	0.80[ASN][1000 genomes]
rs2069264	0.90[ASN][1000 genomes]
rs2104758	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2149980	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2183352	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs340897	0.82[ASN][1000 genomes]
rs381486	0.80[ASN][1000 genomes]
rs391813	0.82[ASN][1000 genomes]
rs393410	0.82[ASN][1000 genomes]
rs396183	0.82[ASN][1000 genomes]
rs397542	0.80[ASN][1000 genomes]
rs405594	0.82[ASN][1000 genomes]
rs414320	0.82[ASN][1000 genomes]
rs418014	0.80[ASN][1000 genomes]
rs434521	0.80[ASN][1000 genomes]
rs439190	0.82[ASN][1000 genomes]
rs440366	0.82[ASN][1000 genomes]
rs447778	0.80[ASN][1000 genomes]
rs4740837	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4740839	0.96[ASN][1000 genomes]
rs55817693	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6477037	0.97[ASN][1000 genomes]
rs6477040	0.90[ASN][1000 genomes]
rs6477041	0.81[ASN][1000 genomes]
rs67217130	0.93[ASN][1000 genomes]
rs67478282	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68075537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694965	0.80[ASN][1000 genomes]
rs7024136	0.98[ASN][1000 genomes]
rs7024235	0.98[ASN][1000 genomes]
rs7024340	0.97[ASN][1000 genomes]
rs7024677	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7040888	0.98[ASN][1000 genomes]
rs7043663	0.98[ASN][1000 genomes]
rs7048296	0.94[ASN][1000 genomes]
rs7856231	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869061	0.98[ASN][1000 genomes]
rs7869064	0.98[ASN][1000 genomes]
rs7869888	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1015450	chr9:5915640-6114652	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv613205	chr9:6032924-6332901	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv916394	chr9:6055497-6322471	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2761482	chr9:6084602-6134787	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6087800-6097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:6091000-6098200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:6091200-6096400	Weak transcription	NHEK	skin
4	chr9:6091200-6096600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:6091200-6096600	Weak transcription	NHDF-Ad	bronchial
6	chr9:6091800-6096400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links