Variant report

Variant	rs10815634
Chromosome Location	chr9:7549103-7549104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1485190	1.00[AMR][1000 genomes]
rs2930724	1.00[AMR][1000 genomes]
rs3005751	1.00[AMR][1000 genomes]
rs61102389	1.00[AMR][1000 genomes]
rs73640252	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34566	chr9:7291742-7781370	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv818681	chr9:7292836-7781365	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv831502	chr9:7428505-7599941	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1029032	chr9:7431547-7764888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv613265	chr9:7493198-7577893	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv429985	chr9:7520274-7619121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv429986	chr9:7522659-7577893	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv429988	chr9:7522659-7595558	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv429987	chr9:7522659-7619121	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1028504	chr9:7523311-7682789	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv539978	chr9:7523311-7682789	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2757310	chr9:7524075-7561271	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2759663	chr9:7524075-7561271	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv892201	chr9:7524075-7742476	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv892202	chr9:7536158-7557471	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1015795	chr9:7540787-7701648	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv892203	chr9:7545181-7592407	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7543600-7549200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:7544000-7549200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:7544600-7549200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:7545000-7550000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:7548000-7549800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:7548000-7549800	Enhancers	Fetal Lung	lung
7	chr9:7548200-7549400	Weak transcription	Ovary	ovary
8	chr9:7548200-7550000	Enhancers	Primary hematopoietic stem cells	blood
9	chr9:7548600-7549600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:7548600-7550000	Enhancers	Thymus	Thymus
11	chr9:7548600-7550200	Enhancers	Fetal Thymus	thymus
12	chr9:7548800-7549600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:7548800-7549600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr9:7548800-7549600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:7548800-7549800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:7548800-7549800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:7548800-7549800	Enhancers	Fetal Stomach	stomach
18	chr9:7548800-7550000	Enhancers	Placenta	Placenta
19	chr9:7549000-7549200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:7549000-7549200	Enhancers	Fetal Muscle Trunk	muscle
21	chr9:7549000-7549200	Flanking Active TSS	Dnd41	blood
22	chr9:7549000-7549400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:7549000-7549400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:7549000-7549400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:7549000-7549600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:7549000-7549600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:7549000-7549800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr9:7549000-7549800	Enhancers	H9 Cell Line	embryonic stem cell
29	chr9:7549000-7549800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr9:7549000-7549800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:7549000-7549800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:7549000-7550000	Enhancers	Fetal Muscle Leg	muscle

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