Variant report

Variant	rs10816190
Chromosome Location	chr9:9821895-9821896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10125513	0.92[GIH][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs10491919	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs10739200	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10816183	0.86[MEX][hapmap]
rs10816186	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10816188	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10816191	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10816196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap]
rs10816199	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10816202	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10816206	1.00[CEU][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10816214	0.84[JPT][hapmap]
rs10816215	0.84[JPT][hapmap]
rs10816216	0.88[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs10977985	0.85[MEX][hapmap]
rs10977990	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs10977997	0.95[MEX][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes]
rs10978000	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10978004	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10978007	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10978013	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10978017	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10978024	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs10978028	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap]
rs10978034	1.00[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.91[ASN][1000 genomes]
rs10978036	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs12684795	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1570591	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs1570592	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap]
rs1570593	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs2147065	0.92[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap]
rs2296171	1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs7851330	0.96[GIH][hapmap];0.80[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs7867030	0.87[CEU][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs7870939	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526471	chr9:9718066-9832245	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2829906	chr9:9737201-9897866	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv892276	chr9:9778653-9851382	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2753179	chr9:9778653-9861006	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1019399	chr9:9780915-9942126	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv471276	chr9:9785685-9863227	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892277	chr9:9785685-9882950	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv892278	chr9:9787587-9851382	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv892281	chr9:9790222-9851382	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv892283	chr9:9792811-9851382	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv466137	chr9:9793285-9831142	Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv613325	chr9:9793285-9831142	Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1018814	chr9:9793285-9957301	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv466139	chr9:9793342-9858060	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv613326	chr9:9793342-9858060	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv466140	chr9:9794545-9851382	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv613327	chr9:9794545-9851382	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv892286	chr9:9794545-9851382	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv892287	chr9:9794545-9869714	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv892288	chr9:9794545-9882950	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv1022667	chr9:9796577-9821895	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv613332	chr9:9798092-9869714	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv1034821	chr9:9798243-9822041	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv2764154	chr9:9798243-9822053	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv437081	chr9:9798410-9824156	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv1025772	chr9:9799050-9822041	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv613335	chr9:9800624-9855408	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
31	nsv1018895	chr9:9801869-9822041	Enhancers	lncRNA	n/a	inside rSNPs	diseases
32	nsv466142	chr9:9801907-9858060	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
33	nsv613337	chr9:9801907-9858060	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
34	nsv613338	chr9:9801907-9859571	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
35	nsv892291	chr9:9802458-9851382	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
36	nsv892292	chr9:9802458-9869714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
37	nsv613340	chr9:9803954-9831209	Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
38	nsv613341	chr9:9803954-9832245	Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
39	nsv613342	chr9:9803954-9855408	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
40	nsv466143	chr9:9803954-9858060	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
41	nsv613343	chr9:9803954-9858060	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv466144	chr9:9803954-9860735	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
43	nsv613344	chr9:9803954-9860735	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv613345	chr9:9804313-9831068	Enhancers Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
45	nsv613346	chr9:9804718-9858060	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
46	nsv1031033	chr9:9807024-9821895	Enhancers	n/a	n/a	inside rSNPs	diseases
47	nsv972604	chr9:9816381-9822029	Enhancers	n/a	n/a	inside rSNPs	diseases
48	nsv613348	chr9:9816955-9851382	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
49	nsv466145	chr9:9816955-9855408	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
50	nsv613349	chr9:9816955-9855408	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links