Variant report

Variant	rs1081697
Chromosome Location	chr17:33629999-33630000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12952232	0.83[EUR][1000 genomes]
rs1554044	0.83[EUR][1000 genomes]
rs4796077	0.87[EUR][1000 genomes]
rs62064200	0.94[ASN][1000 genomes]
rs62064202	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62064209	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62064210	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62064211	0.87[EUR][1000 genomes]
rs62064212	0.87[EUR][1000 genomes]
rs62064246	0.87[EUR][1000 genomes]
rs62079537	0.87[EUR][1000 genomes]
rs62079540	0.87[EUR][1000 genomes]
rs62079541	0.87[EUR][1000 genomes]
rs62079543	0.87[EUR][1000 genomes]
rs62079545	0.87[EUR][1000 genomes]
rs62079546	0.87[EUR][1000 genomes]
rs62079547	0.87[EUR][1000 genomes]
rs62079548	0.87[EUR][1000 genomes]
rs62079549	0.87[EUR][1000 genomes]
rs7207186	0.83[EUR][1000 genomes]
rs7211398	0.87[EUR][1000 genomes]
rs772110	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs772111	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9899691	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33628800-33631400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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