Variant report

Variant	rs62079541
Chromosome Location	chr17:33681788-33681789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1081697	0.87[EUR][1000 genomes]
rs12952232	0.96[EUR][1000 genomes]
rs1554044	0.96[EUR][1000 genomes]
rs4796077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62064209	1.00[EUR][1000 genomes]
rs62064210	1.00[EUR][1000 genomes]
rs62064211	1.00[EUR][1000 genomes]
rs62064212	1.00[EUR][1000 genomes]
rs62064246	1.00[EUR][1000 genomes]
rs62079537	1.00[EUR][1000 genomes]
rs62079540	1.00[EUR][1000 genomes]
rs62079542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62079543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62079545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62079546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62079547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62079548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62079549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207186	0.96[EUR][1000 genomes]
rs7211398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv457725	chr17:33664044-33774159	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv574743	chr17:33664044-33774159	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv515566	chr17:33664818-33768199	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1066569	chr17:33671156-33758566	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1062610	chr17:33671466-33758566	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1066376	chr17:33676494-33758566	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1064831	chr17:33676494-33768199	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv2762399	chr17:33676506-33768199	Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv908076	chr17:33677495-33760166	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv908077	chr17:33677495-33763678	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv908078	chr17:33677495-33769862	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv869869	chr17:33677545-33773100	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	esv3346898	chr17:33680445-33768671	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33673800-33689800	Weak transcription	Gastric	stomach
2	chr17:33673800-33699800	Weak transcription	Ovary	ovary
3	chr17:33674000-33682600	Weak transcription	NHDF-Ad	bronchial
4	chr17:33674000-33686400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr17:33674000-33695600	Weak transcription	Colonic Mucosa	Colon
6	chr17:33674000-33695600	Weak transcription	Placenta	Placenta
7	chr17:33674000-33698600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr17:33674200-33686000	Weak transcription	Brain Hippocampus Middle	brain
9	chr17:33674200-33699800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:33674400-33693600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:33674600-33694600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr17:33674800-33683600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:33675000-33686600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr17:33675000-33688400	Weak transcription	Colon Smooth Muscle	Colon
15	chr17:33675600-33684400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr17:33675800-33687800	Strong transcription	Dnd41	blood
17	chr17:33675800-33694000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr17:33675800-33699800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr17:33676000-33687600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:33676000-33689600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr17:33676000-33689600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr17:33676400-33684800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr17:33677600-33684800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr17:33677600-33691400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:33677600-33691400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr17:33677800-33684200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr17:33678200-33683000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr17:33678200-33687800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr17:33678400-33700000	Weak transcription	Esophagus	oesophagus
30	chr17:33678600-33682800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr17:33678600-33687400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:33678800-33684800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr17:33679000-33683000	Strong transcription	Spleen	Spleen
34	chr17:33679800-33684400	Strong transcription	Adipose Nuclei	Adipose
35	chr17:33680000-33681800	Weak transcription	Primary B cells from cord blood	blood
36	chr17:33680000-33687600	Weak transcription	Thymus	Thymus
37	chr17:33680000-33689400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:33680000-33695600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr17:33680200-33682200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:33680200-33685800	Weak transcription	Primary T cells from cord blood	blood
41	chr17:33680200-33687800	Weak transcription	Aorta	Aorta
42	chr17:33680400-33682800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr17:33680400-33687400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr17:33681000-33683000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr17:33681000-33683200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr17:33681200-33684400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr17:33681200-33684600	Strong transcription	Fetal Thymus	thymus
48	chr17:33681400-33681800	Strong transcription	Lung	lung
49	chr17:33681400-33682000	Strong transcription	Osteobl	bone
50	chr17:33681400-33682200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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