Variant report

Variant	rs62064211
Chromosome Location	chr17:33642848-33642849
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1081697	0.87[EUR][1000 genomes]
rs12952232	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554044	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796077	1.00[EUR][1000 genomes]
rs62064209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62064210	1.00[EUR][1000 genomes]
rs62064212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62064246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62079537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62079540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62079541	1.00[EUR][1000 genomes]
rs62079542	0.91[EUR][1000 genomes]
rs62079543	1.00[EUR][1000 genomes]
rs62079545	1.00[EUR][1000 genomes]
rs62079546	1.00[EUR][1000 genomes]
rs62079547	1.00[EUR][1000 genomes]
rs62079548	1.00[EUR][1000 genomes]
rs62079549	1.00[EUR][1000 genomes]
rs7207186	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7211398	1.00[EUR][1000 genomes]
rs9899691	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33640000-33643200	Enhancers	HMEC	breast
2	chr17:33640200-33643200	Enhancers	NHLF	lung
3	chr17:33640400-33643000	Enhancers	NHDF-Ad	bronchial
4	chr17:33640400-33643000	Enhancers	NHEK	skin
5	chr17:33640800-33643000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr17:33640800-33643200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:33640800-33650200	Weak transcription	Aorta	Aorta
8	chr17:33641000-33643400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr17:33641200-33643000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr17:33641200-33650400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:33641200-33668600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:33641400-33643200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr17:33641400-33643200	Enhancers	Hela-S3	cervix
14	chr17:33641400-33643400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr17:33641400-33653200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:33641600-33643200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr17:33641600-33643400	Enhancers	Adipose Nuclei	Adipose
18	chr17:33641600-33650200	Weak transcription	Thymus	Thymus
19	chr17:33641800-33643000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr17:33641800-33643000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr17:33641800-33643000	Enhancers	Osteobl	bone
22	chr17:33641800-33643200	Enhancers	HSMM	muscle
23	chr17:33641800-33643200	Enhancers	HSMMtube	muscle
24	chr17:33641800-33648800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr17:33641800-33654600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr17:33642000-33643200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
27	chr17:33642000-33644800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr17:33642000-33648800	Weak transcription	Primary T cells from cord blood	blood
29	chr17:33642000-33648800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr17:33642200-33643000	Enhancers	Stomach Mucosa	stomach
31	chr17:33642200-33643200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr17:33642200-33645400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr17:33642200-33649000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr17:33642200-33652800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr17:33642400-33643200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr17:33642600-33643000	Weak transcription	K562	blood
37	chr17:33642600-33644200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr17:33642600-33648200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr17:33642600-33648800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr17:33642800-33643000	Enhancers	Brain Hippocampus Middle	brain
41	chr17:33642800-33648800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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