Variant report

Variant	rs10817098
Chromosome Location	chr9:99866949-99866950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10046794	0.82[ASN][1000 genomes]
rs10046816	0.82[ASN][1000 genomes]
rs10114777	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10122964	0.80[ASN][1000 genomes]
rs10759467	0.82[ASN][1000 genomes]
rs10759470	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10759472	0.82[ASN][1000 genomes]
rs10759476	0.82[ASN][1000 genomes]
rs10759479	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10759483	0.83[AMR][1000 genomes]
rs10817097	0.83[ASN][1000 genomes]
rs10817100	0.82[ASN][1000 genomes]
rs10817120	0.82[ASN][1000 genomes]
rs10980585	0.83[ASN][1000 genomes]
rs10980590	0.83[ASN][1000 genomes]
rs10980603	0.82[ASN][1000 genomes]
rs10980615	0.82[ASN][1000 genomes]
rs10980643	0.82[ASN][1000 genomes]
rs28811401	0.81[ASN][1000 genomes]
rs4484816	0.83[ASN][1000 genomes]
rs4596750	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99850600-99877000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:99856600-99871400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:99866600-99867600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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