Variant report

Variant	rs10980603
Chromosome Location	chr9:99867799-99867800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10046794	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046806	0.90[EUR][1000 genomes]
rs10046816	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10114777	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122964	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759466	0.82[EUR][1000 genomes]
rs10759467	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759468	0.81[EUR][1000 genomes]
rs10759470	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759476	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759479	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759482	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759483	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817097	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817098	0.82[ASN][1000 genomes]
rs10817100	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817113	0.90[EUR][1000 genomes]
rs10817120	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817131	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10980585	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10980590	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10980606	0.89[EUR][1000 genomes]
rs10980615	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10980643	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235571	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12235738	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28811401	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4367681	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4406536	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4484816	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4596750	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60971320	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62556574	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62556579	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6477931	0.89[EUR][1000 genomes]
rs7038671	0.90[EUR][1000 genomes]
rs7865359	0.90[EUR][1000 genomes]
rs7867674	0.85[EUR][1000 genomes]
rs7870897	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99850600-99877000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:99856600-99871400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:99867400-99867800	Active TSS	A549	lung
4	chr9:99867400-99868000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:99867400-99868200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:99867400-99868200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:99867400-99868200	Enhancers	NHEK	skin
8	chr9:99867600-99868000	Enhancers	HSMMtube	muscle
9	chr9:99867600-99868200	Enhancers	HMEC	breast
10	chr9:99867600-99868400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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