Variant report

Variant	rs62556574
Chromosome Location	chr1:167776049-167776050
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:167682192..167686401-chr1:167771227..167777034,8	K562	blood:
2	chr1:167771321..167774969-chr1:167775433..167778218,5	K562	blood:
3	chr1:167775488..167778890-chr1:167781322..167786059,5	K562	blood:
4	chr1:167682753..167685544-chr1:167775534..167777490,2	K562	blood:
5	chr1:167771778..167774447-chr1:167775445..167778267,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10046794	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10046806	0.86[EUR][1000 genomes]
rs10046816	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10114777	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10122964	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10759466	0.81[EUR][1000 genomes]
rs10759467	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10759470	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10759472	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759476	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759479	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759482	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759483	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10817097	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817100	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817113	0.86[EUR][1000 genomes]
rs10817120	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817131	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10980585	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10980590	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10980603	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10980606	0.85[EUR][1000 genomes]
rs10980615	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10980643	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12235571	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12235738	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28811401	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4367681	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406536	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484816	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4596750	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60971320	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62556579	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6477931	0.87[EUR][1000 genomes]
rs7038671	0.86[EUR][1000 genomes]
rs7865359	0.86[EUR][1000 genomes]
rs7867674	0.84[EUR][1000 genomes]
rs7870897	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002698	chr1:167760489-167834111	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:167760000-167781200	Weak transcription	Gastric	stomach
2	chr1:167772400-167776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:167773000-167777000	Weak transcription	NH-A	brain
4	chr1:167774400-167777000	Weak transcription	Osteobl	bone
5	chr1:167774400-167777200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:167774600-167776800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:167774600-167777200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:167774600-167777200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:167774600-167777400	Weak transcription	HSMMtube	muscle
10	chr1:167774800-167776400	Weak transcription	HepG2	liver
11	chr1:167774800-167776600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:167774800-167776800	Weak transcription	K562	blood
13	chr1:167774800-167777000	Weak transcription	NHDF-Ad	bronchial
14	chr1:167774800-167777200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:167774800-167777200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:167774800-167777200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:167774800-167777200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:167775000-167777400	Weak transcription	Dnd41	blood
19	chr1:167775400-167776400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:167775600-167777800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:167775800-167776200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:167775800-167776200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
23	chr1:167776000-167776200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:167776000-167776200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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