Variant report

Variant	rs10759479
Chromosome Location	chr9:99880286-99880287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10046794	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10046806	0.89[EUR][1000 genomes]
rs10046816	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10114777	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122964	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759466	0.83[EUR][1000 genomes]
rs10759467	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10759468	0.87[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs10759470	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759472	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759476	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759482	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759483	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817097	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817098	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10817100	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10817113	0.89[EUR][1000 genomes]
rs10817120	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10817131	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10980585	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10980590	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10980603	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10980606	0.88[EUR][1000 genomes]
rs10980615	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10980643	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12235571	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12235738	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28811401	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4367681	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4406536	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4484816	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4596750	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60971320	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62556574	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62556579	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6477931	0.89[EUR][1000 genomes]
rs7038671	0.89[EUR][1000 genomes]
rs7865359	0.89[EUR][1000 genomes]
rs7867674	0.86[EUR][1000 genomes]
rs7870897	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv972432	chr9:99874607-99958095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99867800-99887600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:99872000-99890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:99875800-99895800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:99876400-99880600	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:99876400-99885600	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:99876800-99888200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:99879800-99880600	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr9:99879800-99880800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:99879800-99880800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:99880000-99880600	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr9:99880000-99881000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:99880200-99880400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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