Variant report

Variant	rs10817550
Chromosome Location	chr9:116762435-116762436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116495741..116497533-chr9:116762322..116765289,2	MCF-7	breast:
2	chr9:116759941..116761511-chr9:116761925..116764666,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10817551	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982028	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787940	0.80[AFR][1000 genomes]
rs11793049	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12378170	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287637	0.87[ASN][1000 genomes]
rs17203945	1.00[ASN][1000 genomes]
rs17793015	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35794395	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
5	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:116752200-116764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:116752800-116762600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:116753600-116764000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:116753600-116764000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:116753600-116764600	Weak transcription	A549	lung
14	chr9:116755400-116768000	Weak transcription	HSMM	muscle
15	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
17	chr9:116756600-116764200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:116756600-116765600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:116756600-116766400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:116756800-116762800	Weak transcription	NHEK	skin
21	chr9:116756800-116765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:116756800-116765200	Weak transcription	NH-A	brain
23	chr9:116756800-116765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:116756800-116768000	Weak transcription	Thymus	Thymus
25	chr9:116756800-116768800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
27	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:116757000-116763000	Weak transcription	Pancreas	Pancrea
29	chr9:116757000-116763400	Weak transcription	Right Ventricle	heart
30	chr9:116757000-116764000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:116757000-116764200	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:116757000-116765000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:116757000-116765000	Weak transcription	Left Ventricle	heart
34	chr9:116757000-116765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:116757000-116765400	Weak transcription	Brain Substantia Nigra	brain
36	chr9:116757000-116765600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:116757000-116766000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:116757000-116766200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr9:116757000-116770200	Weak transcription	Aorta	Aorta
40	chr9:116757000-116773600	Weak transcription	HMEC	breast
41	chr9:116757000-116779600	Weak transcription	Colon Smooth Muscle	Colon
42	chr9:116757000-116779800	Weak transcription	Colonic Mucosa	Colon
43	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
44	chr9:116757600-116772200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:116758000-116765600	Strong transcription	Fetal Stomach	stomach
46	chr9:116758200-116763200	Genic enhancers	Fetal Muscle Leg	muscle
47	chr9:116758200-116767400	Strong transcription	Fetal Intestine Small	intestine
48	chr9:116758400-116762600	Genic enhancers	Spleen	Spleen
49	chr9:116758400-116775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:116758600-116763200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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