Variant report

Variant	rs17793015
Chromosome Location	chr9:116773605-116773606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116768367..116772045-chr9:116772665..116776100,5	MCF-7	breast:
2	chr9:116773482..116775850-chr9:116777082..116779157,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10121424	0.86[EUR][1000 genomes]
rs10124293	0.86[EUR][1000 genomes]
rs10441748	1.00[JPT][hapmap]
rs10759679	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs10817550	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817551	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982035	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs10982040	0.94[EUR][1000 genomes]
rs10982041	0.93[EUR][1000 genomes]
rs11787940	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11793049	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351979	1.00[JPT][hapmap]
rs12378170	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287637	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13297916	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs17203945	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17792105	1.00[JPT][hapmap]
rs2418264	0.86[EUR][1000 genomes]
rs35794395	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574916	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs4979333	0.86[EUR][1000 genomes]
rs752035	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs7863836	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
5	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
6	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:116757000-116779600	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:116757000-116779800	Weak transcription	Colonic Mucosa	Colon
9	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
10	chr9:116758400-116775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:116762200-116775400	Strong transcription	Liver	Liver
12	chr9:116762200-116780400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:116762400-116776800	Strong transcription	Fetal Intestine Large	intestine
14	chr9:116763800-116777000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:116765000-116783200	Weak transcription	NHEK	skin
17	chr9:116765800-116784400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:116766000-116784800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:116766000-116792600	Weak transcription	Stomach Mucosa	stomach
20	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:116766200-116775000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:116766400-116774400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:116766600-116782400	Strong transcription	A549	lung
25	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr9:116766800-116775000	Strong transcription	Fetal Lung	lung
27	chr9:116767000-116774400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:116767000-116780400	Weak transcription	Brain Angular Gyrus	brain
29	chr9:116767200-116779000	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:116767200-116779400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:116767200-116785800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:116767400-116776200	Weak transcription	Brain Anterior Caudate	brain
33	chr9:116768000-116775000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr9:116768000-116777000	Strong transcription	HSMM	muscle
35	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:116768600-116774000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:116768800-116778800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:116768800-116784800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:116769000-116775200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:116769200-116773800	Weak transcription	Left Ventricle	heart
41	chr9:116769200-116774200	Strong transcription	Fetal Intestine Small	intestine
42	chr9:116769200-116774800	Strong transcription	Fetal Stomach	stomach
43	chr9:116769200-116779000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr9:116769400-116773800	Weak transcription	Fetal Kidney	kidney
45	chr9:116769400-116775400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:116769400-116778000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:116769400-116780200	Weak transcription	Thymus	Thymus
48	chr9:116769400-116790400	Weak transcription	Right Ventricle	heart
49	chr9:116770400-116773800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr9:116770400-116779800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links