Variant report

Variant	rs4979333
Chromosome Location	chr9:116798141-116798142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116790423..116792075-chr9:116796145..116798167,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10121424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10124293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759679	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs10982028	0.85[EUR][1000 genomes]
rs10982035	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs10982040	0.91[EUR][1000 genomes]
rs10982041	0.92[EUR][1000 genomes]
rs11793049	0.86[EUR][1000 genomes]
rs13297916	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs17793015	0.86[EUR][1000 genomes]
rs2418264	0.94[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35794395	0.86[EUR][1000 genomes]
rs4574916	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs752035	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7863836	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
5	chr9:116774200-116798400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:116780200-116798600	Weak transcription	Colonic Mucosa	Colon
7	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
8	chr9:116785200-116811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:116785400-116798200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:116785400-116799000	Weak transcription	Brain Substantia Nigra	brain
11	chr9:116785400-116810600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:116785800-116798400	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:116786400-116798800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:116786800-116799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:116787000-116799200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:116787000-116800200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:116787000-116803000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:116787000-116812800	Weak transcription	Primary B cells from cord blood	blood
19	chr9:116787200-116799200	Strong transcription	Fetal Intestine Small	intestine
20	chr9:116787400-116798400	Weak transcription	Left Ventricle	heart
21	chr9:116787400-116798600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:116787400-116800200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:116788000-116802400	Strong transcription	Adipose Nuclei	Adipose
24	chr9:116788200-116798800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:116788200-116800000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:116788400-116799600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:116788600-116798400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:116789600-116800600	Strong transcription	NHLF	lung
29	chr9:116789600-116808600	Weak transcription	HMEC	breast
30	chr9:116790600-116801400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:116790600-116801600	Strong transcription	Spleen	Spleen
32	chr9:116790600-116802600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:116790600-116802600	Strong transcription	Liver	Liver
34	chr9:116792200-116798200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr9:116792200-116802800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:116792200-116810400	Weak transcription	Thymus	Thymus
37	chr9:116792400-116801600	Strong transcription	HUVEC	blood vessel
38	chr9:116792800-116798400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:116792800-116798400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:116792800-116798600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:116793000-116799000	Weak transcription	Fetal Thymus	thymus
42	chr9:116793000-116802600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:116793200-116798600	Weak transcription	Aorta	Aorta
44	chr9:116793200-116811200	Weak transcription	Stomach Mucosa	stomach
45	chr9:116793200-116812200	Weak transcription	K562	blood
46	chr9:116793200-116813800	Weak transcription	NHEK	skin
47	chr9:116793400-116798200	Weak transcription	HSMM	muscle
48	chr9:116793400-116798800	Weak transcription	Fetal Kidney	kidney
49	chr9:116794000-116802400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr9:116794200-116800800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links