Variant report

Variant	rs752035
Chromosome Location	chr9:116794078-116794079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10121424	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs10124293	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs10125470	0.83[CHB][hapmap]
rs10759679	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[EUR][1000 genomes]
rs10982028	0.91[EUR][1000 genomes]
rs10982035	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982040	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10982041	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11793049	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs13297916	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17793015	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs2418264	0.92[EUR][1000 genomes]
rs35794395	0.92[EUR][1000 genomes]
rs4574916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4979333	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7040743	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7863836	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
8	chr9:116774200-116798400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:116780200-116798600	Weak transcription	Colonic Mucosa	Colon
10	chr9:116780600-116796800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:116780800-116796800	Weak transcription	Brain Angular Gyrus	brain
12	chr9:116780800-116798000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
14	chr9:116781000-116797600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:116784000-116798000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr9:116785200-116796000	Weak transcription	NHDF-Ad	bronchial
17	chr9:116785200-116811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:116785400-116798200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:116785400-116799000	Weak transcription	Brain Substantia Nigra	brain
20	chr9:116785400-116810600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:116785800-116798000	Weak transcription	NH-A	brain
22	chr9:116785800-116798400	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:116786400-116796800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:116786400-116798800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr9:116786800-116794200	Strong transcription	Fetal Stomach	stomach
26	chr9:116786800-116794800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:116786800-116799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:116787000-116796400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:116787000-116799200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:116787000-116800200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:116787000-116803000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:116787000-116812800	Weak transcription	Primary B cells from cord blood	blood
33	chr9:116787200-116794200	Weak transcription	Fetal Brain Female	brain
34	chr9:116787200-116799200	Strong transcription	Fetal Intestine Small	intestine
35	chr9:116787400-116798400	Weak transcription	Left Ventricle	heart
36	chr9:116787400-116798600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:116787400-116800200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:116788000-116802400	Strong transcription	Adipose Nuclei	Adipose
39	chr9:116788200-116797400	Strong transcription	HSMMtube	muscle
40	chr9:116788200-116798800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:116788200-116800000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:116788400-116794600	Weak transcription	Right Atrium	heart
43	chr9:116788400-116799600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:116788600-116798400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:116788800-116796600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:116789600-116795000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:116789600-116800600	Strong transcription	NHLF	lung
48	chr9:116789600-116808600	Weak transcription	HMEC	breast
49	chr9:116790200-116794200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr9:116790200-116794400	Strong transcription	Fetal Muscle Leg	muscle

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