Variant report

Variant	rs12378170
Chromosome Location	chr9:116765731-116765732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10441748	1.00[JPT][hapmap]
rs10817550	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817551	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982028	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787940	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11793049	1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351979	1.00[JPT][hapmap]
rs13287637	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17203945	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17792105	1.00[JPT][hapmap]
rs17793015	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35794395	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
4	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:116755400-116768000	Weak transcription	HSMM	muscle
8	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
10	chr9:116756600-116766400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:116756800-116768000	Weak transcription	Thymus	Thymus
12	chr9:116756800-116768800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
14	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:116757000-116766000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:116757000-116766200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:116757000-116770200	Weak transcription	Aorta	Aorta
18	chr9:116757000-116773600	Weak transcription	HMEC	breast
19	chr9:116757000-116779600	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:116757000-116779800	Weak transcription	Colonic Mucosa	Colon
21	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
22	chr9:116757600-116772200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:116758200-116767400	Strong transcription	Fetal Intestine Small	intestine
24	chr9:116758400-116775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:116760000-116773400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:116760800-116771600	Strong transcription	NHLF	lung
27	chr9:116762000-116765800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:116762000-116766000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:116762200-116766000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:116762200-116766400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:116762200-116766600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:116762200-116770800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:116762200-116772800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:116762200-116775400	Strong transcription	Liver	Liver
35	chr9:116762200-116780400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:116762400-116765800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:116762400-116776800	Strong transcription	Fetal Intestine Large	intestine
38	chr9:116762600-116766600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:116762800-116768000	Enhancers	Placenta	Placenta
40	chr9:116763000-116769400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:116763400-116768000	Genic enhancers	Fetal Muscle Trunk	muscle
42	chr9:116763800-116777000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:116764000-116766600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:116764000-116768000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:116764000-116772200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:116764200-116766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:116764200-116766400	Enhancers	Brain Hippocampus Middle	brain
48	chr9:116764200-116767200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:116764200-116767400	Enhancers	Fetal Heart	heart
50	chr9:116764400-116767400	Enhancers	Fetal Brain Male	brain

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