Variant report

Variant	rs10817747
Chromosome Location	chr9:118095937-118095938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1029343	0.83[CEU][hapmap]
rs10817751	0.83[AFR][1000 genomes]
rs10982682	0.83[AFR][1000 genomes]
rs10982704	0.82[CEU][hapmap];0.83[AFR][1000 genomes]
rs10982705	0.82[CEU][hapmap]
rs10982706	0.82[CEU][hapmap]
rs10982707	0.82[CEU][hapmap]
rs12336615	0.82[CEU][hapmap];0.82[AFR][1000 genomes]
rs72748112	0.82[AFR][1000 genomes]
rs7858288	0.82[AFR][1000 genomes]
rs7859677	0.83[CEU][hapmap];0.82[AFR][1000 genomes]
rs7869481	0.82[AFR][1000 genomes]
rs7870064	0.82[AFR][1000 genomes]
rs7873749	0.82[CEU][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118095000-118096200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:118095000-118096400	Enhancers	Fetal Lung	lung
4	chr9:118095200-118096000	Enhancers	Fetal Stomach	stomach
5	chr9:118095400-118096000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:118095400-118096000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:118095800-118096200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:118095800-118096200	Enhancers	NHDF-Ad	bronchial
9	chr9:118095800-118096400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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