Variant report
| Variant | rs10982682 |
|---|---|
| Chromosome Location | chr9:118099414-118099415 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:118091992..118094872-chr9:118096955..118099916,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10817747 | 0.83[AFR][1000 genomes] |
| rs10817751 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10982700 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10982704 | 0.90[AFR][1000 genomes] |
| rs10982705 | 0.85[AFR][1000 genomes] |
| rs10982706 | 0.85[AFR][1000 genomes] |
| rs10982707 | 0.85[AFR][1000 genomes] |
| rs11791380 | 0.86[AFR][1000 genomes] |
| rs12336615 | 0.88[AFR][1000 genomes] |
| rs13300054 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2213912 | 0.83[EUR][1000 genomes] |
| rs2418334 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2418335 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4350049 | 0.85[AFR][1000 genomes] |
| rs4461971 | 0.85[AFR][1000 genomes] |
| rs4593631 | 0.85[AFR][1000 genomes] |
| rs72748112 | 0.88[AFR][1000 genomes] |
| rs7849100 | 0.85[AFR][1000 genomes] |
| rs7849386 | 0.85[AFR][1000 genomes] |
| rs7858288 | 0.88[AFR][1000 genomes] |
| rs7859677 | 0.88[AFR][1000 genomes] |
| rs7864546 | 0.80[AFR][1000 genomes] |
| rs7869481 | 0.88[AFR][1000 genomes] |
| rs7870064 | 0.88[AFR][1000 genomes] |
| rs7870220 | 0.83[AFR][1000 genomes] |
| rs7873749 | 0.88[AFR][1000 genomes] |
| rs7874336 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv615251 | chr9:117975864-118514444 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:118099400-118104400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
