Variant report

Variant	rs13300054
Chromosome Location	chr9:118113627-118113628
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10817751	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817752	0.87[YRI][hapmap]
rs10817753	1.00[YRI][hapmap]
rs10982682	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982688	0.85[YRI][hapmap]
rs10982690	0.87[YRI][hapmap]
rs10982700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982704	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10982705	0.82[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10982706	0.82[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10982707	0.82[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11788880	1.00[YRI][hapmap]
rs11791380	0.86[AFR][1000 genomes]
rs12336615	0.82[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2213912	0.84[EUR][1000 genomes]
rs2418334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350049	0.84[AFR][1000 genomes]
rs4461971	0.84[AFR][1000 genomes]
rs4593631	0.84[AFR][1000 genomes]
rs7048610	0.85[YRI][hapmap]
rs72748112	0.88[AFR][1000 genomes]
rs7849100	0.84[AFR][1000 genomes]
rs7849386	0.84[AFR][1000 genomes]
rs7858288	0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs7858557	0.85[YRI][hapmap]
rs7859677	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7869481	0.88[AFR][1000 genomes]
rs7870064	0.88[AFR][1000 genomes]
rs7870220	0.82[AFR][1000 genomes]
rs7871330	1.00[YRI][hapmap]
rs7873749	0.82[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7874336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118110800-118122400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:118112400-118115400	Weak transcription	HMEC	breast
3	chr9:118112400-118115400	Weak transcription	NHEK	skin
4	chr9:118112400-118115800	Weak transcription	NHDF-Ad	bronchial
5	chr9:118112600-118114400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:118112600-118115400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:118112800-118113800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:118112800-118116000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:118112800-118121800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:118113400-118116000	Weak transcription	NHLF	lung

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